PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026388130.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 371aa MW: 42457.3 Da PI: 6.9041

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026388130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	77	99	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_026388130.1 77 CSydGCGKTFIDAGALRKHSHIH 99 78889**************7766 PP
2	zf-C2H2	15.5	5e-05	104	128	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cg+ F ++s LkrH H XP_026388130.1 104 YVCHyeGCGRKFLDSSKLKRHFLIH 128 9********************8877 PP
3	zf-C2H2	22.2	3.6e-07	134	158	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL+ H+rtH XP_026388130.1 134 FVCPheGCGKAFSLDFNLRAHMRTH 158 89**********************9 PP
4	zf-C2H2	18.1	7.6e-06	164	188	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + Lk+Hi++H XP_026388130.1 164 HICPyaDCGKRYAHEYKLKTHIKSH 188 68**********************6 PP
5	zf-C2H2	16.3	2.8e-05	228	253	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C+ks+ + + L+ H+r+ H XP_026388130.1 228 YACPyeGCDKSYIHEYKLNLHLRReH 253 89*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MMENYHLYEK RAIPKSKAPA TRWFKEWVPQ DVISTGGKCK ILKWVTEDTL KGLKAKVKEP 60 RAEEQEPEPS TEVLFLCSYD GCGKTFIDAG ALRKHSHIHG ERQYVCHYEG CGRKFLDSSK 120 LKRHFLIHTG ERDFVCPHEG CGKAFSLDFN LRAHMRTHSQ ENYHICPYAD CGKRYAHEYK 180 LKTHIKSHHE KQNSPNNPVK HTPPVEKTPA AAKPPAVVYG SASSDRPYAC PYEGCDKSYI 240 HEYKLNLHLR REHPGHNPEE HVGKRAREAD NEMDEGSDQD MYGGKSSSGK NVKRAKTKPV 300 PKTVTPKVVP QRKAPAVVPT NYSLTRKPLP SKEAYEEEDS EETEEEDHDN VDEDGWRYAE 360 NNDDDEETDE D

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MMENYHLYEK RAIPKSKAPA TRWFKEWVPQ DVISTGGKCK ILKWVTEDTL KGLKAKVKEP  60
RAEEQEPEPS TEVLFLCSYD GCGKTFIDAG ALRKHSHIHG ERQYVCHYEG CGRKFLDSSK  120
LKRHFLIHTG ERDFVCPHEG CGKAFSLDFN LRAHMRTHSQ ENYHICPYAD CGKRYAHEYK  180
LKTHIKSHHE KQNSPNNPVK HTPPVEKTPA AAKPPAVVYG SASSDRPYAC PYEGCDKSYI  240
HEYKLNLHLR REHPGHNPEE HVGKRAREAD NEMDEGSDQD MYGGKSSSGK NVKRAKTKPV  300
PKTVTPKVVP QRKAPAVVPT NYSLTRKPLP SKEAYEEEDS EETEEEDHDN VDEDGWRYAE  360
NNDDDEETDE D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-125	C2H2 family protein