PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026387294.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

Trihelix

Protein Properties

Length: 446aa MW: 51506.6 Da PI: 6.5111

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026387294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71	2.2e-22	119	216	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+++++++e+ ++ +kk++W++vsk+m+erg+ +sp+q ++k+++lnkryk++++ +++ +++++++ +++d XP_026387294.1 119 KWTDKMVRLLITVVSYIGEDAVGDCssggrrkfailQKKGKWKSVSKVMAERGCYVSPQQSEDKFNDLNKRYKRLTDVLGRGtSCKVVENPALLD 213 7************999988877667778889999********************************************6699999999999 PP trihelix 84 qle 86 ++ XP_026387294.1 214 MMD 216 997 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MEGNISAGYM IPGLPYGVLD LQGPMHVTHQ QHPQTLHQQH NSHNLQGSMV DPPICENFPM 60 SVGNMHECEQ PMGLMNYNKG DKGKICTSEE DEQSFNEDSI DGHNEAGRGK KGSPWQRMKW 120 TDKMVRLLIT VVSYIGEDAV GDCSSGGRRK FAILQKKGKW KSVSKVMAER GCYVSPQQSE 180 DKFNDLNKRY KRLTDVLGRG TSCKVVENPA LLDMMDHLSE KAKEDVKKIL SSKHLFYEEM 240 CSYHNGNRLH LPSDPALQRS LQLALRSRDD HDSHDSRRNL QEDFNDDDDQ DGEEDHDDEA 300 DENHNLHGDQ AMFGLPGCFP KRMKQGHEYE DVSFGNPSNS QDCGKRSNSH MVNSPVDINQ 360 VFPEGSKGSW IQKQWVMSRS LQLEEQKLHL QVQTLELEKQ RFKWQKFRRK KDRELDKLRM 420 ENERMKLENE RMTLELKRKE LESNYN

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MEGNISAGYM IPGLPYGVLD LQGPMHVTHQ QHPQTLHQQH NSHNLQGSMV DPPICENFPM  60
SVGNMHECEQ PMGLMNYNKG DKGKICTSEE DEQSFNEDSI DGHNEAGRGK KGSPWQRMKW  120
TDKMVRLLIT VVSYIGEDAV GDCSSGGRRK FAILQKKGKW KSVSKVMAER GCYVSPQQSE  180
DKFNDLNKRY KRLTDVLGRG TSCKVVENPA LLDMMDHLSE KAKEDVKKIL SSKHLFYEEM  240
CSYHNGNRLH LPSDPALQRS LQLALRSRDD HDSHDSRRNL QEDFNDDDDQ DGEEDHDDEA  300
DENHNLHGDQ AMFGLPGCFP KRMKQGHEYE DVSFGNPSNS QDCGKRSNSH MVNSPVDINQ  360
VFPEGSKGSW IQKQWVMSRS LQLEEQKLHL QVQTLELEKQ RFKWQKFRRK KDRELDKLRM  420
ENERMKLENE RMTLELKRKE LESNYN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	399	411	KQRFKWQKFRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-110	Trihelix family protein