PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026386514.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 299aa MW: 34605.8 Da PI: 6.6871

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026386514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.8	4.4e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklyey+s XP_026386514.1 9 KLIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSKGKLYEYCS 59 569**********************************************96 PP
2	K-box	84.7	2e-28	89	174	13	98
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + + +q++ kLk++ e Lq+++R+l+GedL++Ls++eL+qLe+qLe slk++Rs++++++++++ elq+ke+ l+e+nk+L+kk XP_026386514.1 89 VEDETYQDYLKLKARAEVLQQNNRNLQGEDLGPLSVNELEQLENQLEVSLKQVRSTRTRYMFDHLTELQQKEQLLREANKSLNKKK 174 4567899***************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MGRGRVELKL IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS KGKLYEYCSS 60 SSMLKTLERY QRNTNSSTSQ SSEIVAFDVE DETYQDYLKL KARAEVLQQN NRNLQGEDLG 120 PLSVNELEQL ENQLEVSLKQ VRSTRTRYMF DHLTELQQKE QLLREANKSL NKKKMDEDKA 180 EIDLQLSWQA GEQRRQQQVD DHRALQLSWQ EGEQRRQQQQ MDEHKAEMAL QWSWQAAEQQ 240 RQIAAYNHHI NAAASERFFQ PLECSPSLQS GNSLSNASNM MNSAAPVQNL LGFFPGWTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.2	5e-62	MIKC_MADS family protein