PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026381990.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

Trihelix

Protein Properties

Length: 879aa MW: 97046.3 Da PI: 8.6463

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026381990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.8	1.4e-18	790	870	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++Li++r +++ +++ k ++ lWee+s +++ g++r+p qCk+ w +l ++y++ k ek s ++pyf+++e XP_026381990.1 790 KWKPEEIKKLIKMRGDLDVKFQVVKGRMVLWEEISTNLQGYGINRTPSQCKSLWTSLLQKYEESKIDEKT-----SGSWPYFTDME 870 7***********************************************************99999986.....557*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence
MAALNALSLC PCKFSSCLRN PRSKPSVSCS VGVPSISGTP GTRIPISKSI RREGPGKSMA 60 DSVQRKMEKF YEGSDGPPIR VLPIGGLGEI GMNCMLVGNN DRYILIDAGV MFPDDDELGV 120 QKIIPDTTFI RRWSHKIEAV VITHGHEDHI GALPWVIPAL DSHTPIFASS FTMELIKKRL 180 KEFGIFTSRL KPFKAKKKFT AGPFEVEPIR VTHSIPDCCG LVLRCKDGTI LHTGDWKIDE 240 SPLDGKVFDR ETLEDLSKEG VTLMMSDSTN VLSPGRTISE NVVRDALLRN ISAATGRVIT 300 TQFASNIHRL GSVKAAADLT GRKLVFVGMS LRTYLDAAFR DGQAPIDPST LVKVEDIDNY 360 APKDLLIVTT GSQAEPRAAL NLASYGSSHS LKLTKDDLIL YSAKVIPGNE TRVMKMMNRI 420 SELGSTIVMG KSEGLHTSGH AYRGELEEVL RLVKPQHFLP IHGELLFLKE HELLGKSTGI 480 NHTTVIKNGE MLGVSHLRNR RVLSQGYANG LISLGKENLQ LMYSDGDKAF GTSSELCIDE 540 RLRIATDGII IVSMEIMRPE TSNSAVAPTI KGKIKITTRC LWLDKGKLLD ALHKTANAAL 600 SSCPINCPLA HMERTVSEVL RKMVRKYSSK RPEVIVNAME NPSAVIAEEL KEKLSGKSRG 660 DYGTSALNKA DDAHPRKKRS SKRIEEGKAD TYLRKNTTQQ DVKGKSIDER LLQEEDTTVS 720 SSDSTSSASS VEGDTDDFWK SFVIKSPIQG ESGLVEKNLV LNQDGSESSE DESVESSNPE 780 KAIKPVKRNK WKPEEIKKLI KMRGDLDVKF QVVKGRMVLW EEISTNLQGY GINRTPSQCK 840 SLWTSLLQKY EESKIDEKTS GSWPYFTDME KILSDRESA

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence

MAALNALSLC PCKFSSCLRN PRSKPSVSCS VGVPSISGTP GTRIPISKSI RREGPGKSMA  60
DSVQRKMEKF YEGSDGPPIR VLPIGGLGEI GMNCMLVGNN DRYILIDAGV MFPDDDELGV  120
QKIIPDTTFI RRWSHKIEAV VITHGHEDHI GALPWVIPAL DSHTPIFASS FTMELIKKRL  180
KEFGIFTSRL KPFKAKKKFT AGPFEVEPIR VTHSIPDCCG LVLRCKDGTI LHTGDWKIDE  240
SPLDGKVFDR ETLEDLSKEG VTLMMSDSTN VLSPGRTISE NVVRDALLRN ISAATGRVIT  300
TQFASNIHRL GSVKAAADLT GRKLVFVGMS LRTYLDAAFR DGQAPIDPST LVKVEDIDNY  360
APKDLLIVTT GSQAEPRAAL NLASYGSSHS LKLTKDDLIL YSAKVIPGNE TRVMKMMNRI  420
SELGSTIVMG KSEGLHTSGH AYRGELEEVL RLVKPQHFLP IHGELLFLKE HELLGKSTGI  480
NHTTVIKNGE MLGVSHLRNR RVLSQGYANG LISLGKENLQ LMYSDGDKAF GTSSELCIDE  540
RLRIATDGII IVSMEIMRPE TSNSAVAPTI KGKIKITTRC LWLDKGKLLD ALHKTANAAL  600
SSCPINCPLA HMERTVSEVL RKMVRKYSSK RPEVIVNAME NPSAVIAEEL KEKLSGKSRG  660
DYGTSALNKA DDAHPRKKRS SKRIEEGKAD TYLRKNTTQQ DVKGKSIDER LLQEEDTTVS  720
SSDSTSSASS VEGDTDDFWK SFVIKSPIQG ESGLVEKNLV LNQDGSESSE DESVESSNPE  780
KAIKPVKRNK WKPEEIKKLI KMRGDLDVKF QVVKGRMVLW EEISTNLQGY GINRTPSQCK  840
SLWTSLLQKY EESKIDEKTS GSWPYFTDME KILSDRESA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	676	705	RKKRSSKRIEEGKADTYLRKNTTQQDVKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein