PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026381113.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 300aa MW: 34793.1 Da PI: 8.0624

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026381113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.8	4.4e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklyey+s XP_026381113.1 9 KLIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSKGKLYEYCS 59 569**********************************************96 PP
2	K-box	85.7	9.7e-29	85	173	9	97
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++ + + +q++ kLk++ e Lq+++R+l+GedL++Ls+keL+qLe+qLe slk++ s++++++++++ elq+ke++l+e+nk+L+kk XP_026381113.1 85 VALDVQDETYQDYLKLKARAEVLQQNNRNLQGEDLGPLSVKELEQLENQLEVSLKQVQSTRTQYMFDHLTELQQKEQMLREANKTLNKK 173 5555567889****************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MGRGRVELKL IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS KGKLYEYCSS 60 SSMLKTLERY QRNTNSSTSQ SSEIVALDVQ DETYQDYLKL KARAEVLQQN NRNLQGEDLG 120 PLSVKELEQL ENQLEVSLKQ VQSTRTQYMF DHLTELQQKE QMLREANKTL NKKKVDEDKA 180 EIDLQFSWQA GEQRRQQQVD DHRRKIALQL SRQEGEQRRQ QQQMDEHKAE MALQWSWQAS 240 EQQRQFAAYN HHINAAASER FFQPLECTPS LQSGLSNASN MMNSAAPVQN LLGFFPGWTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	3e-75	MIKC_MADS family protein