PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026379681.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 622aa MW: 69431 Da PI: 9.0123

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026379681.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	3	24	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rHir+H XP_026379681.1 3 KCDKCVREFCSPINYRRHIRLH 24 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MQKCDKCVRE FCSPINYRRH IRLHRRSLKI EKDSTKIRDL MGAFWDKLSM DEAKDVISFD 60 TVMLEGVPGS AVVRALASFI RKPGFFSLPQ SYVKAGAALL DLIQGRPSRF PISSTELFSI 120 LHDASEKTFL CPGTAISMQK FMFDGEPGKI GLEMKNLIAC TSFLVEQKLI KECLVEKDAE 180 ALRCQKLLVE EEEAAQRRQF ELLERKRLKK LRQKEQKAKE QVEVEDVDLK EDSSISVEVS 240 ESTSNSHTPE LSIVRPSSTD EGCDNADNAD KAEIDMAYET SNSTDPQNFD HQHVQQGNSQ 300 QQGDGQQHGN GRQRAVANRR SRRSEPNSFR AGHVVPVSKL GAIQKRGNYR DLKTTPLANK 360 SQRVWTRKTK IENERISSNA VVQRDTRDEQ DVGGSGDLLI GSIPVTLGEC STSSQIKVDQ 420 CTSDYQPGQR NISSGSMQEK SVKIELVQSG TNKSKTKHWR PVGRRERRKR EKIEFVGESS 480 NLIDDSCIPR NNSDGCSGLE GAGSSEATKE AHSTGRKLFS SHEVKAFLAQ RWKEAIASDH 540 VKLVLSPETE LPECVENQDV QATAHIPSDS GNRSILGSAE NRLAGTNGPE RAKNGNSKHA 600 KFKAKPERGY KLKYIPKQRN SS

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MQKCDKCVRE FCSPINYRRH IRLHRRSLKI EKDSTKIRDL MGAFWDKLSM DEAKDVISFD  60
TVMLEGVPGS AVVRALASFI RKPGFFSLPQ SYVKAGAALL DLIQGRPSRF PISSTELFSI  120
LHDASEKTFL CPGTAISMQK FMFDGEPGKI GLEMKNLIAC TSFLVEQKLI KECLVEKDAE  180
ALRCQKLLVE EEEAAQRRQF ELLERKRLKK LRQKEQKAKE QVEVEDVDLK EDSSISVEVS  240
ESTSNSHTPE LSIVRPSSTD EGCDNADNAD KAEIDMAYET SNSTDPQNFD HQHVQQGNSQ  300
QQGDGQQHGN GRQRAVANRR SRRSEPNSFR AGHVVPVSKL GAIQKRGNYR DLKTTPLANK  360
SQRVWTRKTK IENERISSNA VVQRDTRDEQ DVGGSGDLLI GSIPVTLGEC STSSQIKVDQ  420
CTSDYQPGQR NISSGSMQEK SVKIELVQSG TNKSKTKHWR PVGRRERRKR EKIEFVGESS  480
NLIDDSCIPR NNSDGCSGLE GAGSSEATKE AHSTGRKLFS SHEVKAFLAQ RWKEAIASDH  540
VKLVLSPETE LPECVENQDV QATAHIPSDS GNRSILGSAE NRLAGTNGPE RAKNGNSKHA  600
KFKAKPERGY KLKYIPKQRN SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	211	ERKRLKKL
2	464	471	RRERRKRE
3	467	472	RRKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	3e-78	C2H2 family protein