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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM90354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28261.2 Da PI: 8.5772 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.5 | 6.4e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaevaviifs++gklye++s OWM90354.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 102.1 | 7.3e-34 | 85 | 173 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ ++++qe+ kLk+++e Lqr+qR+llGedL++Ls+keL+qLe+q+e+slk++Rs K++++l+ + +lqk+ek+l e+nkaLrkklee OWM90354.1 85 NDPQNSYQEYMKLKARVEILQRSQRNLLGEDLSPLSMKELEQLEHQVESSLKQVRSAKTHVMLDRLADLQKREKMLLETNKALRKKLEE 173 45799*********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVAVIIFSN RGKLYEFCSS 60 SSMMKTLERY HQCSYAAMEA THPCNDPQNS YQEYMKLKAR VEILQRSQRN LLGEDLSPLS 120 MKELEQLEHQ VESSLKQVRS AKTHVMLDRL ADLQKREKML LETNKALRKK LEESNTRIPL 180 RLAWDAEDHN DDPYAQYPPQ SEGLNFHPLG GNTTLQIGYT NAIGPNEVNA GATHQNVEGF 240 YNGWML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 3e-97 | MIKC_MADS family protein |