PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MIKC_MADS
Protein Properties Length: 294aa    MW: 33599.1 Da    PI: 6.386
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.93.2e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien   rqvtfskRrng+lKKA+EL +LCdaevaviifs+tgklyeyss
  OWM78410.1  9 KRIENANSRQVTFSKRRNGLLKKAQELAILCDAEVAVIIFSNTGKLYEYSS 59
                79***********************************************96 PP

2K-box62.71.5e-21911741598
       K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 ++ ++e++ +k+ i++Lq  q +llG+dL+   lk+Lq Leqq++++l+++R++K++ l+eq+e+++ +e+++  en++Lr++ 
  OWM78410.1  91 KEEEREAEEVKEAISQLQLRQLRLLGKDLTGVGLKDLQILEQQINDGLSSVRERKEQWLMEQLEKSRLQEQRAMLENETLRRQA 174
                 56789****************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MGRGKIEIKR IENANSRQVT FSKRRNGLLK KAQELAILCD AEVAVIIFSN TGKLYEYSSS  60
GMKQTLSRYS KCMESSESTV VQYKPEILPE KEEEREAEEV KEAISQLQLR QLRLLGKDLT  120
GVGLKDLQIL EQQINDGLSS VRERKEQWLM EQLEKSRLQE QRAMLENETL RRQANIYSPD  180
KHIFSMLTSF LKKPSVSSLM ISIVFFSALS SQIEEFRGFL PCTDLIDCHR NEQKSTFFAS  240
HVDPATLEEA RDHSLENEDS DTALHLGLPN EIYRKRKVPE SESGSSSASR FGLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.18e-62MIKC_MADS family protein