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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM76225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 27724.7 Da PI: 8.8122 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s OWM76225.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 93.4 | 3.8e-31 | 89 | 176 | 13 | 100 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + s+qqe+ kLk+++e Lq++qR+llGe+L++Ls keL++Le+qL+ slk+iRs++++++l+q++elq+ke +l+e+n+aL+++l+e OWM76225.1 89 LELSSQQEYLKLKARYEALQKTQRNLLGEELGPLSSKELESLERQLDASLKQIRSTRTQYMLDQLSELQRKEYMLNEANRALKQRLME 176 45589*******************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCSS 60 SSVLKTLERY QKCSYNAMEP TVSAKEASLE LSSQQEYLKL KARYEALQKT QRNLLGEELG 120 PLSSKELESL ERQLDASLKQ IRSTRTQYML DQLSELQRKE YMLNEANRAL KQRLMEGYQA 180 ANLLQLNPAA DHEVGYGRQG APPQPDGLFH QLDCEPTLHI GYQPDPVAAV TAGPSANNFM 240 PGWLP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-115 | MIKC_MADS family protein |