![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OWM76223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19209.1 Da PI: 10.0798 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78 | 6.8e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ks+r vtfskRr g++KKA+ LSvLCd+++a+++fss+gkly +ss OWM76223.1 9 KQIEDKSKRLVTFSKRRSGLIKKANQLSVLCDVDIALLVFSSSGKLYKFSS 59 78***********************************************96 PP | |||||||
2 | K-box | 29.6 | 3e-11 | 77 | 133 | 27 | 82 |
K-box 27 eienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 e e+L+ ++ + G ++ L +++L+qLe+qL+++l k+RskK++ +eq +l k OWM76223.1 77 EAEELEaVKITEVGGPAIDLLGVNDLMQLEKQLHSALDKVRSKKERDQKEQHGQLNK 133 55666655667888999***************************9988888777766 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence |
MGRKKLAMKQ IEDKSKRLVT FSKRRSGLIK KANQLSVLCD VDIALLVFSS SGKLYKFSSS 60 PDSLINLVKH YRNQLGEAEE LEAVKITEVG GPAIDLLGVN DLMQLEKQLH SALDKVRSKK 120 ERDQKEQHGQ LNKEIAVLVS NDDRFKGFRR DLNVPIDGDR GEATPHLLQW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10140.2 | 1e-20 | MIKC_MADS family protein |