PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM63675.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 368aa MW: 41843.9 Da PI: 5.5986

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM63675.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.2	1.1e-18	155	200	6	51
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++ rq+ fskRrn +l KAeE+ +LCd ev +iif+ tg+lyeyss OWM63675.1 155 STSRQIKFSKRRNSLLRKAEEIATLCDSEVGLIIFACTGQLYEYSS 200 688*****************************************96 PP
2	K-box	57.8	4.7e-20	34	120	9	94
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq.eenkaL 94 ++ +++sl+ e a Lk ei+ Lq++qRhl+G++L+++ l+eL+ Le +L+++lk++R++K++ + ++ el++k e+ ++n++L OWM63675.1 34 MSALEMQSLRSETASLKLEISRLQESQRHLMGQELKEMRLEELNDLEAKLDTGLKNVRAQKTDRIEQENIELRRKLSEIMiQNNTKL 120 566789***********************************************************9999998888776651555555 PP
3	K-box	46.6	1.5e-16	225	313	10	99
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++ + lq e+a Lk +i+ Lq +R+l+Ge +++ +k+L+ Le+qLe l+ +R +K+++ i+el k +++++en +L++k++ OWM63675.1 225 APSDIKVLQDEVASLKLQIQDLQDRNRRLMGET-SDMGIKDLEILENQLELHLSAVRLQKDQHRSGYIKELHLKRNRVHQENIELKEKMD 313 55677889*************999*98.9*************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MIVIVSTLAV IASMKSILER YGKVKQEVNN LPCMSALEMQ SLRSETASLK LEISRLQESQ 60 RHLMGQELKE MRLEELNDLE AKLDTGLKNV RAQKTDRIEQ ENIELRRKLS EIMIQNNTKL 120 KGEQKDQGIV ETEGKDEVLE RGGGEGQIKG SEAGSTSRQI KFSKRRNSLL RKAEEIATLC 180 DSEVGLIIFA CTGQLYEYSS TSMKEIIERY NNQKGESHEA LETNAPSDIK VLQDEVASLK 240 LQIQDLQDRN RRLMGETSDM GIKDLEILEN QLELHLSAVR LQKDQHRSGY IKELHLKRNR 300 VHQENIELKE KMDLIGKGNK EYLNDEELLI SGVASKSLKI LLSYALQCWI FLDLAYAISA 360 YMCLEAGS

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MIVIVSTLAV IASMKSILER YGKVKQEVNN LPCMSALEMQ SLRSETASLK LEISRLQESQ  60
RHLMGQELKE MRLEELNDLE AKLDTGLKNV RAQKTDRIEQ ENIELRRKLS EIMIQNNTKL  120
KGEQKDQGIV ETEGKDEVLE RGGGEGQIKG SEAGSTSRQI KFSKRRNSLL RKAEEIATLC  180
DSEVGLIIFA CTGQLYEYSS TSMKEIIERY NNQKGESHEA LETNAPSDIK VLQDEVASLK  240
LQIQDLQDRN RRLMGETSDM GIKDLEILEN QLELHLSAVR LQKDQHRSGY IKELHLKRNR  300
VHQENIELKE KMDLIGKGNK EYLNDEELLI SGVASKSLKI LLSYALQCWI FLDLAYAISA  360
YMCLEAGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	7e-48	MIKC_MADS family protein