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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g580570.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | WOX | ||||||||
Protein Properties | Length: 272aa MW: 31071.6 Da PI: 5.6625 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.2 | 5e-22 | 90 | 150 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Pd.00g580570.m01 90 RQRWTPTPVQLQILERLFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 150 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.6 | 5.5e-33 | 89 | 152 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Pd.00g580570.m01 89 ARQRWTPTPVQLQILERLFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 152 789***********************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence |
MEWEKLQQKE HEMDGQANGN GNGGVLYVKV MTDEQLETLR KQIAVYASIC EQLVEMHKNL 60 TAQQDLAGVR MGNLYCDPLM TSAGHKITAR QRWTPTPVQL QILERLFEQG NGTPSKQKIK 120 EITSELSQHG QISETNVYNW FQNRRARSKR KQQNAACNHA ESEVETEVDS PKDKKTRPEE 180 LFQSQQNSAQ RTEDLCFQSP EISSDLHFLD PQTTKTDKMF PSNSGLRTSR HLSEMSFYDE 240 VLSNSRNDLM TGKIEAGNYN LFQQAEDYGM TG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 152 | RRARSKRKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-97 | WOX family protein |