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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1162160.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | NF-YC | ||||||||
Protein Properties | Length: 727aa MW: 79280 Da PI: 6.2405 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 88.2 | 8.2e-28 | 395 | 449 | 47 | 101 |
NF-YC 47 lskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 l++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivpr++l Pd.00g1162160.m01 395 LTRACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDL 449 689*************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence |
MAAVTLLALG NGAPDVFASV AAVRTGQYRT GFGAILSAGT FVSAFVVGFV AIYAAPFSLS 60 PAPFVRDVLF YLTAALFLFY VYLSAEIYLW QAVGFVGFYL FFVGLVFWMD LGLGAGGKKS 120 RVEEGVVGDS EIQRGLVAPD FEIGQVSENS EDGKPSFGFR RALVMISKAW ELPVSVLLKL 180 TIPQAAPSEW SRFYTSANIA LCPLALLYAC NSFMPFNHPV VFLLSDTHLP LWFVVLLASS 240 PLALLHYIVE KDPPKNEQMP VLLIAFVMSV FWISTTAGEL LNCLAALGSL LELPPALLGL 300 TVLAWGNSVG DLVADVALAK AGHPAMAMAG CFAGPMFNML VGLGTALVIQ TYNVYPEVYE 360 LQFHVEHHLF EKRAKLLWIH KGITNPNLWG CIKKLTRACE MFILELTLRS WNHTEENKRR 420 TLQKNDIAAA ITRTDIFDFL VDIVPREDLK DEVLASIPRG TVSVGGPADA LPYCYMPPQH 480 APQVGAPGMI MVHLHLINKQ SKRAKAQGTP RCDAVSYISG RPQMAASGPT RFAGTSKTNE 540 PDHFDPQQPI LDVKPLNSMP YIGPPTMHPS TTTDSDAQEK LKPTVIILPP DSTREQWNKA 600 LETNKSGIVL TGSAARGQVG PIIGLVDIGE NEDSYLFRVN LPGVLRDENF ECSVDIDGEV 660 FIKGVTTTGE KTVCKNSQVF KMQTQNLCPP GHFSISFQLP GPVECQKVTL SFETDGILEA 720 IVQKKLP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 419 | 425 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 4e-43 | NF-YC family protein |