PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP044819.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24864.5 Da PI: 8.9362 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.9 | 2.2e-07 | 11 | 59 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE.-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif.sstgklyeys 50 i n+ r+ t + r+ ++KK E+ +LCd+ i++ stg+ +++ PCP044819.1 11 IVNDNARKATSKRSRESLFKKMREITTLCDVGGFTIVYdPSTGEPSTWP 59 567777888866669****************876666615688888887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MPRSKVKLAW IVNDNARKAT SKRSRESLFK KMREITTLCD VGGFTIVYDP STGEPSTWPE 60 LPLLQQLIAR YQSIPFPERL AKMTDQETYL KEKVAKLKDR INRIQRENFE VEVNDIMHQI 120 TQNGKPFHTF EDRELTNLLL FTEEKMKEIQ KRIKTMEPEV NVPPSDGGEE FNMTVPEHGE 180 DRREYLLKYL EWAKRKLAME NAAGASSSTK QFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-25 | M-type_MADS family protein |