PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044777.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 735aa MW: 82604.3 Da PI: 9.0008

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044777.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00024	94	115	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+F++ +L H+ +H PCP044777.1 94 SCQVCNKTFPSMKSLCGHMGSH 115 7******************887 PP
2	zf-C2H2	13	0.00032	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H PCP044777.1 166 HVCPICFKTFPTGQALGGHKRSH 188 79******************999 PP
3	zf-C2H2	11.7	0.00082	393	414	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k F++ +L+ H+r+H PCP044777.1 393 SCYVCKKDFPSIKSLHGHMRLH 414 69******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MKTFQRKLLG EYLNGADDTK GKELVLYNGH KTQAVDRSRT CSECGMRFRN GQALGGHISI 60 HFQRHLGPKN NKKFKVKQQQ LLLEYPSWNN SRLSCQVCNK TFPSMKSLCG HMGSHRQRAQ 120 SPPPSSSLSS ADQYSDGDSY IDSASKHYKY PKSKKRKFLD GYKGHHVCPI CFKTFPTGQA 180 LGGHKRSHYY KGEPVLKATG AAKNKVASTD GHEDSAKIKV ASADDREDCV IIDPGSQYWT 240 DKTIHVASRR ILLDLDLNKP PKEATEKRYL IGESMWDLKV EKNKDLKEDY EGEEDQEIMD 300 DDDVHAQEIE EQVALRGDDY HKGKQVVLDS DVHHRSGDRV CEQCGKRFQN GKALGGHRKV 360 HLNQSLLPQK NKALFKQKKK HGSSKGGSSS EVSCYVCKKD FPSIKSLHGH MRLHRERDWK 420 GVRPPGAVQP LSEEETDNDA AIFLVNWRNI EQRRRIAYQR DPNGEDKVGE FGRKKLIEES 480 PVGYKGNPSS KNIKFDDGSK KITKEGSKNF GGAKPKKDFS LFGQTHKQIS RKPQEFRVTR 540 SDATLSDMNV DESAGFSSKY AAHQVSESAL EKAIEKSPGG YKGNKTSEKS RSESVNFVPN 600 KLNIGGKKTI KDTALNDQTH YQISRRTQEF GAKYAERENY NGPSATSNQV LERAEEAEAV 660 EHETKEFVCN ICPSKFSTGQ ALGGHKRCHN NRVQVEEAPE TAEVAPVAEE DGEITTVPEK 720 LDLDLNQLPY ESNDE

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MKTFQRKLLG EYLNGADDTK GKELVLYNGH KTQAVDRSRT CSECGMRFRN GQALGGHISI  60
HFQRHLGPKN NKKFKVKQQQ LLLEYPSWNN SRLSCQVCNK TFPSMKSLCG HMGSHRQRAQ  120
SPPPSSSLSS ADQYSDGDSY IDSASKHYKY PKSKKRKFLD GYKGHHVCPI CFKTFPTGQA  180
LGGHKRSHYY KGEPVLKATG AAKNKVASTD GHEDSAKIKV ASADDREDCV IIDPGSQYWT  240
DKTIHVASRR ILLDLDLNKP PKEATEKRYL IGESMWDLKV EKNKDLKEDY EGEEDQEIMD  300
DDDVHAQEIE EQVALRGDDY HKGKQVVLDS DVHHRSGDRV CEQCGKRFQN GKALGGHRKV  360
HLNQSLLPQK NKALFKQKKK HGSSKGGSSS EVSCYVCKKD FPSIKSLHGH MRLHRERDWK  420
GVRPPGAVQP LSEEETDNDA AIFLVNWRNI EQRRRIAYQR DPNGEDKVGE FGRKKLIEES  480
PVGYKGNPSS KNIKFDDGSK KITKEGSKNF GGAKPKKDFS LFGQTHKQIS RKPQEFRVTR  540
SDATLSDMNV DESAGFSSKY AAHQVSESAL EKAIEKSPGG YKGNKTSEKS RSESVNFVPN  600
KLNIGGKKTI KDTALNDQTH YQISRRTQEF GAKYAERENY NGPSATSNQV LERAEEAEAV  660
EHETKEFVCN ICPSKFSTGQ ALGGHKRCHN NRVQVEEAPE TAEVAPVAEE DGEITTVPEK  720
LDLDLNQLPY ESNDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	1e-14	C2H2 family protein