PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044514.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 447aa MW: 51085 Da PI: 8.4007

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044514.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.5	6.2e-07	65	86	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H PCP044514.1 65 TCEECGATFKKPAHLKQHMQSH 86 6*******************99 PP
2	zf-C2H2	19.2	3.4e-06	164	188	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC+ sF+rk++L+rH+ H PCP044514.1 164 YVCSvgDCHSSFRRKDHLNRHLLQH 188 99*******************9887 PP
3	zf-C2H2	13.3	0.00025	232	258	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ++C+ Cgk+F s L++H ++ H PCP044514.1 232 HVCQeiGCGKVFQFASKLRKHENSyvH 258 799******************987555 PP
4	zf-C2H2	17	1.6e-05	324	348	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C ++Fs+ksnL++H + H PCP044514.1 324 KCSnnGCLQTFSTKSNLTQHVKAvH 348 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MDNEEADQKV PIFIDIRRYY CEFCGICRSK KALIASHILD HHKGEMDMEK EAGGEGEGEK 60 IKSNTCEECG ATFKKPAHLK QHMQSHSLEH WIPHKELQNA RGFGLEWTST RWETSCEAPS 120 SEPQSRTVQF ENSKMRESFD LSGPVTGGRP PVKLHQASLN HRPYVCSVGD CHSSFRRKDH 180 LNRHLLQHQG KLFKCPIENC NRGFVCQGNM SRHVKELHND DGTYVGRGQK QHVCQEIGCG 240 KVFQFASKLR KHENSYVHLD SVEAFCSEPG CMQYFTNEQC FKAHILSSHQ HVTCEICGSK 300 KLKRNIKRHL IAHKGRVPAV ERIKCSNNGC LQTFSTKSNL TQHVKAVHLE DKPFVCSFSG 360 CGMRFAYKHV RDNHEKTGRH VYAYGDFVEA DEQFQSRPRG GCKRKCPSVE MLLRKRVTPP 420 DQLGLEPEYL SWLLAQDAED GNRVMAF

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MDNEEADQKV PIFIDIRRYY CEFCGICRSK KALIASHILD HHKGEMDMEK EAGGEGEGEK  60
IKSNTCEECG ATFKKPAHLK QHMQSHSLEH WIPHKELQNA RGFGLEWTST RWETSCEAPS  120
SEPQSRTVQF ENSKMRESFD LSGPVTGGRP PVKLHQASLN HRPYVCSVGD CHSSFRRKDH  180
LNRHLLQHQG KLFKCPIENC NRGFVCQGNM SRHVKELHND DGTYVGRGQK QHVCQEIGCG  240
KVFQFASKLR KHENSYVHLD SVEAFCSEPG CMQYFTNEQC FKAHILSSHQ HVTCEICGSK  300
KLKRNIKRHL IAHKGRVPAV ERIKCSNNGC LQTFSTKSNL TQHVKAVHLE DKPFVCSFSG  360
CGMRFAYKHV RDNHEKTGRH VYAYGDFVEA DEQFQSRPRG GCKRKCPSVE MLLRKRVTPP  420
DQLGLEPEYL SWLLAQDAED GNRVMAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-110	C2H2 family protein