PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP044475.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 345aa    MW: 39408.5 Da    PI: 6.0707
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP044475.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.38.6e-181353343
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 i n++ r+vtf kRrng+lKKA EL +LCd++v+ i++  +
  PCP044475.1 13 IPNERSRKVTFRKRRNGLLKKAVELHTLCDVKVCTIVYERK 53
                 889**********************************9654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MGRNKSKLPL ELIPNERSRK VTFRKRRNGL LKKAVELHTL CDVKVCTIVY ERKSKGKVSR  60
LATFPEEFKD VKEIIDKYKS NSSKVKNVQS LGDFYATQTV QVKEEFGKLR SKSCEEKYPA  120
WEDRLDAFSV EQMLDLLTNL ENKIVDTHKM HGMMKESKQI VVQETIPPKE EIVVNIQILL  180
KATFESNQEY SQMQSASTFW ANNNNIQYTC SSATTSNSNI KTSTWDIPAP YGNMDGNSTF  240
YNPMQQQQQQ QPCMYDSIFS SAASQQQEEA VVPSVENPNT IGIVPLSVSY DQPMLSLTMQ  300
PSYLECPISA SAFGLSSEYE QQFGAFQSQH TFYDNVFFDN MAHFE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-15M-type_MADS family protein