PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044344.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 477aa MW: 52053.5 Da PI: 5.6487

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044344.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	42	87	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v +G ++W++Iar ++ gR++k+c++rw + PCP044344.1 42 RGPWSPEEDAVLTRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 87 89****************************.*********985 PP
2	Myb_DNA-binding	51	3.4e-16	94	138	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++++ eEd ++v a++ +G++ W+ Ia+ ++ gRt++ +k++w++ PCP044344.1 94 RKPFSGEEDRIIVSAHAIHGNK-WAVIAKLLP-GRTDNAIKNHWNST 138 7899****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MTVPNDGVSK EADDVPGTEA ELIELGNAAE LNEGAVRSGK VRGPWSPEED AVLTRLVSNF 60 GARNWSLIAR GIPGRSGKSC RLRWCNQLDP CVKRKPFSGE EDRIIVSAHA IHGNKWAVIA 120 KLLPGRTDNA IKNHWNSTLK RRCFDKVSFN PGPGEMMEGD TFDRKRASSE ETLSVGNISS 180 FKTCEGQAKE GCCAAESKEH STLRAESRDH LTLQSTLCRP VARVSAFSVY NRPSDPANAS 240 AFSRTVPSHG PLVPTTKLDF GFDNFLEGAC NEPMVPELCS HGCCDRVEGH SQGSLLGPEF 300 VEYDEPPPFS SHELISIATD LNKIAWIKSS LESSTMSMPE NVASQRVVQA AATTLQMGVP 360 ANNPMNDHMR FEEGRNKLMG MMTEVQSTQE GRCSSESGSE IVERESSVSE GSVEVDLEEV 420 KMHVVKVERD CRICHLSLDA TNQESGIPIE LGCSCKADLA AAHKQCAEAW FKIKGNK

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MTVPNDGVSK EADDVPGTEA ELIELGNAAE LNEGAVRSGK VRGPWSPEED AVLTRLVSNF  60
GARNWSLIAR GIPGRSGKSC RLRWCNQLDP CVKRKPFSGE EDRIIVSAHA IHGNKWAVIA  120
KLLPGRTDNA IKNHWNSTLK RRCFDKVSFN PGPGEMMEGD TFDRKRASSE ETLSVGNISS  180
FKTCEGQAKE GCCAAESKEH STLRAESRDH LTLQSTLCRP VARVSAFSVY NRPSDPANAS  240
AFSRTVPSHG PLVPTTKLDF GFDNFLEGAC NEPMVPELCS HGCCDRVEGH SQGSLLGPEF  300
VEYDEPPPFS SHELISIATD LNKIAWIKSS LESSTMSMPE NVASQRVVQA AATTLQMGVP  360
ANNPMNDHMR FEEGRNKLMG MMTEVQSTQE GRCSSESGSE IVERESSVSE GSVEVDLEEV  420
KMHVVKVERD CRICHLSLDA TNQESGIPIE LGCSCKADLA AAHKQCAEAW FKIKGNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	2e-97	MYB family protein