PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP044252.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 206aa MW: 24027.6 Da PI: 9.1858 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.3 | 1.9e-08 | 10 | 52 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +i n+s r+ t+ k r g + K +E+ LC++ + i++s++ PCP044252.1 10 FIINNSSRKATLRKMRRGFMNKMYEINKLCEVPTCAIMYSPDE 52 788999**********************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MTRRKVKLAF IINNSSRKAT LRKMRRGFMN KMYEINKLCE VPTCAIMYSP DESQPDFWPD 60 SSGVQRLIEQ FRNMPEGEQN KKMVTHEMLL KQRIKKEQEK LNKLKKENRE KQIRMLMNQC 120 LTGKPLTGLD FNDLEDMGSM INETLKDIVA KIKSRKEEEL VEMDQPSVAQ PPMRASVTDE 180 NFHDTIXRVP RSIGDVLTPQ FGDVDD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-36 | M-type_MADS family protein |