PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044084.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 950aa MW: 105740 Da PI: 6.7157

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044084.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	357.6	1.9e-109	581	950	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 lv++L++cAeav+ +d++ a+alL +l+ +a g+++qR+ ++f+++La rla v+ l + + ++ +++ s+e+ al+l +e++P ++f+h+ PCP044084.1 581 LVQQLIACAEAVAFRDTAHASALLFELRANAQAFGTSFQRVSSCFVQGLADRLAL-VKPLGDGGVTDPNVKSKpfSAEKDEALHLVYEICPQIQFGHF 677 689*************************************************8.8888888777777666678999999************* PP GRAS 97 taNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN Ilea+eg + vH+iD+++ ++G QW L++ La+Rp ++ ++lRiTgvgs s+e+l+ +g+ L+ A++++++++f++ v+++le+l PCP044084.1 678 VANASILEAFEGGSSVHVIDLGMtlglQHGYQWRDLIDRLANRPgQPLHRLRITGVGS----SSERLQVIGDDLKLHAQSMKINLDFSA-VESNLENL 770 ****************976222268889********555569****....9**********************.79** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 +++++++ gE l++n++lqlh l++es + + +vL+++ +lsPk++v+veq+++hn++ Fl rf+eal+ ysa+fdsl+a lp+ + r+k+E+ PCP044084.1 771 KPQDFHLVDGEILIINSILQLHCLVKESRGTLN---SVLQALHELSPKLMVLVEQDTSHNGPFFLGRFMEALHNYSAIFDSLDAMLPKYDTRRVKMEQ 865 *********************99888777...9********************************************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++g+ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+pl+++a qa l++ + +gy+v e++g+lvlgWk++p++++S+W+ PCP044084.1 866 FYFGEEIKNIVSCEGPARVERHERVDQWRRRMRRAGFQPAPLRTTA--QAVKWLETNACEGYTVLEDKGCLVLGWKSKPIIATSCWK 950 **************************************9875..888999999999************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 950 aa Download sequence
MPPLSLKLHS LFFKYHLRHQ LHNLTQSAHL QNTDPKFGIT SRPEEPVVPA NPTFQNGVAT 60 KNIHIDPNSS LSLRIFLPDT VLPLKAPNPT SRVGALLSPS PDGSNSDDGV MYRGYSPDQL 120 VGRRHRKVPI FLQFHGGGFV CGSNDTSWND AFCRRMAKLC DAIVVAVGYR LAPESPYPAA 180 FEDGVTVLKW VAKQVNLASV QNGRSRIFDS FGSSMVEPWL AAHGDPSRCV LLGVSCGANL 240 ADYVARKAVE AGDLLDPIKV VAQVLMYPFF IGSTPTRSEI KLANSYLFDK ATCMLAWKLF 300 LTEEEFDLDH PASNPLMPAG RGPPLKNMPP TLTVVAQHDW MRDRGIAYSE ELRKANVDAP 360 LLDYKDTVHE FATLDVLLEK PQAKACAEDI TIWVKKYISL RGHDFNLHII YTRIVYISPQ 420 GDSIGQASNT LESYTMASDL YVQPEFCGKN TSNEVIGFDL NLSSMSCLPY PSLSALEHDS 480 ANWVIPFVDK TRNHKRLKQE HDANYGFKVG TDYYSFYTGS DSNMCTSGLT SLPTIRFRDH 540 ISAHTRRYLA AEAMEEAFAT LMRGKEDESG EGEGSGDEMK LVQQLIACAE AVAFRDTAHA 600 SALLFELRAN AQAFGTSFQR VSSCFVQGLA DRLALVKPLG DGGVTDPNVK SKPFSAEKDE 660 ALHLVYEICP QIQFGHFVAN ASILEAFEGG SSVHVIDLGM TLGLQHGYQW RDLIDRLANR 720 PGQPLHRLRI TGVGSSSERL QVIGDDLKLH AQSMKINLDF SAVESNLENL KPQDFHLVDG 780 EILIINSILQ LHCLVKESRG TLNSVLQALH ELSPKLMVLV EQDTSHNGPF FLGRFMEALH 840 NYSAIFDSLD AMLPKYDTRR VKMEQFYFGE EIKNIVSCEG PARVERHERV DQWRRRMRRA 900 GFQPAPLRTT AQAVKWLETN ACEGYTVLED KGCLVLGWKS KPIIATSCWK

Sequence ? help Back to Top

Protein Sequence Length: 950 aa Download sequence

MPPLSLKLHS LFFKYHLRHQ LHNLTQSAHL QNTDPKFGIT SRPEEPVVPA NPTFQNGVAT  60
KNIHIDPNSS LSLRIFLPDT VLPLKAPNPT SRVGALLSPS PDGSNSDDGV MYRGYSPDQL  120
VGRRHRKVPI FLQFHGGGFV CGSNDTSWND AFCRRMAKLC DAIVVAVGYR LAPESPYPAA  180
FEDGVTVLKW VAKQVNLASV QNGRSRIFDS FGSSMVEPWL AAHGDPSRCV LLGVSCGANL  240
ADYVARKAVE AGDLLDPIKV VAQVLMYPFF IGSTPTRSEI KLANSYLFDK ATCMLAWKLF  300
LTEEEFDLDH PASNPLMPAG RGPPLKNMPP TLTVVAQHDW MRDRGIAYSE ELRKANVDAP  360
LLDYKDTVHE FATLDVLLEK PQAKACAEDI TIWVKKYISL RGHDFNLHII YTRIVYISPQ  420
GDSIGQASNT LESYTMASDL YVQPEFCGKN TSNEVIGFDL NLSSMSCLPY PSLSALEHDS  480
ANWVIPFVDK TRNHKRLKQE HDANYGFKVG TDYYSFYTGS DSNMCTSGLT SLPTIRFRDH  540
ISAHTRRYLA AEAMEEAFAT LMRGKEDESG EGEGSGDEMK LVQQLIACAE AVAFRDTAHA  600
SALLFELRAN AQAFGTSFQR VSSCFVQGLA DRLALVKPLG DGGVTDPNVK SKPFSAEKDE  660
ALHLVYEICP QIQFGHFVAN ASILEAFEGG SSVHVIDLGM TLGLQHGYQW RDLIDRLANR  720
PGQPLHRLRI TGVGSSSERL QVIGDDLKLH AQSMKINLDF SAVESNLENL KPQDFHLVDG  780
EILIINSILQ LHCLVKESRG TLNSVLQALH ELSPKLMVLV EQDTSHNGPF FLGRFMEALH  840
NYSAIFDSLD AMLPKYDTRR VKMEQFYFGE EIKNIVSCEG PARVERHERV DQWRRRMRRA  900
GFQPAPLRTT AQAVKWLETN ACEGYTVLED KGCLVLGWKS KPIIATSCWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-73	GRAS family protein