PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP043616.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 80aa    MW: 9160.69 Da    PI: 10.1891
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP043616.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr g++KKA+E+SvLCdaeva+iifs++gkl+eys+
  PCP043616.1  9 KRIENKINRQVTFSKRRSGLMKKAQEISVLCDAEVALIIFSTKGKLFEYSN 59
                 79***********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLMK KAQEISVLCD AEVALIIFST KGKLFEYSND  60
SCAVDNILLV YGVEFSQVYR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-37MIKC_MADS family protein