PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP043201.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 449aa    MW: 48720 Da    PI: 5.2799
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP043201.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.48e-112874463374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                   lLl+cAe+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf  AL++r+ +s+ ++y+ l+ ++ +  +s++ ++ l+ ++ +sP++kfsh+t Nq
  PCP043201.1  87 GLLLQCAEFVAMDSLDDASDLLPEIAELSSPFGSSPERVGAYFSHALQTRVISSCLGTYSPLANKTLTLAQSQRIFNGLQSYNSISPLVKFSHFTSNQ 184
                  58******************************************************************999999999********************* PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                  aI +a++ge++vH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e l++tg+rLa+fA++lg+pfef++l  k  +  +l++L ++p
  PCP043201.1 185 AIFQALDGEDHVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLQSTGRRLADFASSLGLPFEFQPLEGKIGSITDLSQLGIRP 278
                  *************************************************....9**************************988888999********* PP

         GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                   Ea++V++++  h l+d ++s       +L+l+ sl+Pk++ ++eq+++h s+sFl rf+eal+yysalfd+l  +l+++s er++vE++l+g ei+n
  PCP043201.1 279 SEATVVHWMH--HCLYDVTGSDLA----TLRLLGSLRPKLIMIAEQDLSH-SGSFLSRFVEALHYYSALFDALGDGLGADSLERHMVEQQLFGCEIRN 369
                  *********9..888877777777....**********************.899******************************************** PP

         GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++a  g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  PCP043201.1 370 ILAVGGPKRTGEVK-VERWGDELKRVGFGPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 446
                  ********998887.9*************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MLQSLVPQSP IAAATPSNNN PTSSSSSMKT KRVDRDLAGS GSGDSDAEDP SFTKRPNSGR  60
NFRESTADDR DTEPVAEGES DGLRLLGLLL QCAEFVAMDS LDDASDLLPE IAELSSPFGS  120
SPERVGAYFS HALQTRVISS CLGTYSPLAN KTLTLAQSQR IFNGLQSYNS ISPLVKFSHF  180
TSNQAIFQAL DGEDHVHVID LDIMQGLQWP GLFHILASRS KKIRSMRITG FGSSSELLQS  240
TGRRLADFAS SLGLPFEFQP LEGKIGSITD LSQLGIRPSE ATVVHWMHHC LYDVTGSDLA  300
TLRLLGSLRP KLIMIAEQDL SHSGSFLSRF VEALHYYSAL FDALGDGLGA DSLERHMVEQ  360
QLFGCEIRNI LAVGGPKRTG EVKVERWGDE LKRVGFGPVS LGGNPAAQAS LLLGMFPWKG  420
YTLVEENGCL KLGWKDLSLL TASAWQPLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein