PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP042627.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 443aa    MW: 49138 Da    PI: 5.1557
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP042627.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.81.1e-90474322373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlt 97 
                  ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r ++ +++ ++   +s+t ++  s+ +++++l  ++++ P+++f++ +
  PCP042627.1  47 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRASKVCPTPMNFNGSSST-STIPSRLMSVTELagYVDLIPWHRFGYCA 143
                  689***************************************************88887765544444.345566666666689************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.vak.rledl. 189
                   N+aI +a++g+ +vHi+Df+i++++QWp+L++aLa+Rpegpp lR+T+++   ++    + + ee+g rL +f +  +vpfefnv+   + +le l 
  PCP042627.1 144 SNSAIFKAIQGCPKVHILDFSITHCMQWPTLIDALAKRPEGPPLLRVTVLNWRPQVpplLNVSSEEVGLRLGNFSRFRDVPFEFNVIeN-SsSLELLv 240
                  **************************************************9966668999999***********************952.32555444 PP

         GRAS 190 ....eleeLrvkpgEalaVnlvlqlhrll.........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                      ++++L+++++E+l+Vn++  l +l          ++++s    r+++L++++sl+P+++vvv++++d++++s+  r++ +++y +  fdsle+ 
  PCP042627.1 241 ttelNPSSLDLREDEVLVVNCQNWLRYLSdeprggipgHQDGS---MRNTFLNTIRSLNPRIIVVVDEDSDLSAPSLSSRITTCFNYLWIPFDSLETF 335
                  4444999**********************44444444444444...566************************************************* PP

         GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                  lp++s +r+ +E   +g +i+n++  eg +r+er e+  + ++rl++ GF+++ + e++a ++k+ll +++  g+ ++ e++ lvl+Wk+++ v+++a
  PCP042627.1 336 LPKDSTQRMDYESD-VGHKIENIIGFEGHQRIERLESGVTMSQRLRNIGFSSIIFCEETAREVKALLDEHA-SGWGMKREEDMLVLTWKGHNSVFATA 431
                  **************.********************************************************.889999999***************** PP

         GRAS 373 W 373
                  W
  PCP042627.1 432 W 432
                  * PP
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    
MKTEVRGSVT SISLQNPSTA LLTTSQGTSL TGALTGCLGS LDGACIEKLL LHCASALESN  60
DVTLAQQVMW VLNNVASSVG DPNQRLTSWI LRALISRASK VCPTPMNFNG SSSTSTIPSR  120
LMSVTELAGY VDLIPWHRFG YCASNSAIFK AIQGCPKVHI LDFSITHCMQ WPTLIDALAK  180
RPEGPPLLRV TVLNWRPQVP PLLNVSSEEV GLRLGNFSRF RDVPFEFNVI ENSSSLELLV  240
TTELNPSSLD LREDEVLVVN CQNWLRYLSD EPRGGIPGHQ DGSMRNTFLN TIRSLNPRII  300
VVVDEDSDLS APSLSSRITT CFNYLWIPFD SLETFLPKDS TQRMDYESDV GHKIENIIGF  360
EGHQRIERLE SGVTMSQRLR NIGFSSIIFC EETAREVKAL LDEHASGWGM KREEDMLVLT  420
WKGHNSVFAT AWVPNPNGLL IED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein