PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP041624.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 660aa    MW: 74901.7 Da    PI: 7.2598
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP041624.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.58.3e-1162886563372
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  + L++cA+av+s d++ a++l++++++++sp g++++Rla yf++AL+arla+s +  y+ l + +t+    +e l+a++++   +P+ k+ ++ aN+
  PCP041624.1 288 TMLTQCAQAVASYDQRTASELIKKIRQHSSPCGEATERLAYYFANALEARLAGSRTPSYSPLLSPQTP---ATEILKAHRVYITSCPFTKMLYFFANR 382
                  689**************************************************999999999777777...89************************* PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  +I++ +e+++r+HiiDf+is+G+QWp+L+q L++R +gpp+lRiT+++ p++g   +e++eet +rL+k+A+++ vpfe+nv +a+++e++++e+L+v
  PCP041624.1 383 TIMKLAESATRLHIIDFGISYGFQWPCLIQRLSERCGGPPNLRITAIELPQPGfrPTERVEETMRRLEKYAKRFVVPFEYNV-IAQKWETIRFEDLKV 479
                  ****************************************************9****************************9.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  ++ E ++Vn++ +l +++de+v ++s+rd+vL+l+k+++P+++ +   +  +ns+ F++rf eal +ys+lfd++ea++pre+e+r + E ++ gr+i
  PCP041624.1 480 DRSELTVVNCMRRLRHIPDETVVMSSPRDTVLNLIKKINPDLFLHGVVNGTYNSPFFVKRFREALFHYSSLFDMFEATIPREDEHRLMFEGAIYGRDI 577
                  ************************************************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                  +nvvaceg er+er et+++W+ r ++aGFk+vpl+++ + ++k++l+ +   + +r++e+ +++++gWk+r +++++a
  PCP041624.1 578 MNVVACEGLERVERPETYKHWQVRYQRAGFKQVPLDQELMRKVKAMLKLMRyHNDFRIDEDGHWMLQGWKGRIVMALCA 656
                  ************************************************9999999********************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    
MERFTVGHGS NQNLGNHGST NPIFLPTNLD HNPSDSRSSQ IPVNGFQVNH EPTNTLFLPP  60
NPDHPSESGF SSSGSDGDTF DISVCNHPVL KYISDILLEE DLEGKPCMLQ DCLALQAAEK  120
SFYDVLNPKG RSSSQSPLPV DRSFENSDDD FTECYHGSIG CVAARTDSVS GSETSHVQSC  180
PVESSSDAYN STYRLKSKKN HLREDGDYTE EGRSNKQSAA SADGPEPQEM FDEVLLYKDA  240
RHAFESCSDD QSVKSGSGKL KCNKQPKVSK AARSKTKNKN RELVDLCTML TQCAQAVASY  300
DQRTASELIK KIRQHSSPCG EATERLAYYF ANALEARLAG SRTPSYSPLL SPQTPATEIL  360
KAHRVYITSC PFTKMLYFFA NRTIMKLAES ATRLHIIDFG ISYGFQWPCL IQRLSERCGG  420
PPNLRITAIE LPQPGFRPTE RVEETMRRLE KYAKRFVVPF EYNVIAQKWE TIRFEDLKVD  480
RSELTVVNCM RRLRHIPDET VVMSSPRDTV LNLIKKINPD LFLHGVVNGT YNSPFFVKRF  540
REALFHYSSL FDMFEATIPR EDEHRLMFEG AIYGRDIMNV VACEGLERVE RPETYKHWQV  600
RYQRAGFKQV PLDQELMRKV KAMLKLMRYH NDFRIDEDGH WMLQGWKGRI VMALCALKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.11e-175GRAS family protein