PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP040268.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 558aa MW: 60668 Da PI: 6.826

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP040268.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.5	3e-18	44	91	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l d+v+++G g+W+++ r g++R++k+c++rw ++l PCP040268.1 44 KGPWTAAEDQILMDYVRKHGEGNWNSVQRNSGLNRCGKSCRLRWANHL 91 79******************************************9986 PP
2	Myb_DNA-binding	47.6	3.9e-15	97	140	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E+ l+++++ ++G++ W++ a+ ++ gRt++++k++w++ PCP040268.1 97 KGSFSPDEERLILELHSKYGNK-WARMASQLP-GRTDNEIKNYWNT 140 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MTPNSNDSIN INGGSMLQSQ GLPESRGGDG GGGHVVEGSK GLKKGPWTAA EDQILMDYVR 60 KHGEGNWNSV QRNSGLNRCG KSCRLRWANH LRPNLKKGSF SPDEERLILE LHSKYGNKWA 120 RMASQLPGRT DNEIKNYWNT RVKRRQRQGL PLYPHDIKQS QYSYSHSHSH SPPTSLTIPN 180 GVLNPPTTST QNSLHPNTDN SPSPTFCFQI QSPTQTHHHH HIPPLSPTTP CLSPLSSPHQ 240 PKPTSLTSLP LFDPTATATA STSSFSSSTP SFTFHRPAPI LGAPLRYKRY RDSVGYSPPI 300 SPTPQRYTSI LRTSSMPDIA SFQLTAAGTS TMPDISSFQF PRTFNNPFPP MPPTQFEYSD 360 GLLSPSGSVY SVQSELPSNQ VSQMHSEITI DANVAVAAES VADENNSGNG LLEDMLQEAE 420 ALARGGGGGG GGGNNNSRMR GNGMLGSFDE KQVSDDYGRW LQSTTSMASS LFEAKPIHDD 480 HLNSMPEDLS KLFSFIPSTE PVSDWYSDSG ELSNGHSSGV TDTSLDFDMQ HMASLFPITA 540 TGEHGRASSS WDNLPGIC

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MTPNSNDSIN INGGSMLQSQ GLPESRGGDG GGGHVVEGSK GLKKGPWTAA EDQILMDYVR  60
KHGEGNWNSV QRNSGLNRCG KSCRLRWANH LRPNLKKGSF SPDEERLILE LHSKYGNKWA  120
RMASQLPGRT DNEIKNYWNT RVKRRQRQGL PLYPHDIKQS QYSYSHSHSH SPPTSLTIPN  180
GVLNPPTTST QNSLHPNTDN SPSPTFCFQI QSPTQTHHHH HIPPLSPTTP CLSPLSSPHQ  240
PKPTSLTSLP LFDPTATATA STSSFSSSTP SFTFHRPAPI LGAPLRYKRY RDSVGYSPPI  300
SPTPQRYTSI LRTSSMPDIA SFQLTAAGTS TMPDISSFQF PRTFNNPFPP MPPTQFEYSD  360
GLLSPSGSVY SVQSELPSNQ VSQMHSEITI DANVAVAAES VADENNSGNG LLEDMLQEAE  420
ALARGGGGGG GGGNNNSRMR GNGMLGSFDE KQVSDDYGRW LQSTTSMASS LFEAKPIHDD  480
HLNSMPEDLS KLFSFIPSTE PVSDWYSDSG ELSNGHSSGV TDTSLDFDMQ HMASLFPITA  540
TGEHGRASSS WDNLPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	1e-68	MYB family protein