PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP039959.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 529aa    MW: 58685.1 Da    PI: 6.5609
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP039959.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.29.9e-1161575281374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 
                  lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La+rla  ++  +  +  s+ s+k+   +++  al+l +e++P ++f+h+
  PCP039959.1 157 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLANRLALVQPLGAVGFIGSAMSTKDfaLDKKEEALRLVYEICPHIQFGHF 254
                  689**************************************************9955543333433444434445999999***************** PP

         GRAS  97 taNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                  +aN+ Ilea+ege+ vH++D++++    +G QW  L+q+La+R+++pp +lRiTgvg       ++l+ +g  L+ +Ae+lg+++ef+v v+++le+l
  PCP039959.1 255 VANSSILEAFEGESFVHVVDLGMTlglpHGDQWRGLIQSLATRTGQPPtRLRITGVGL----CGDRLQIIGGELKAYAESLGINLEFSV-VESNLENL 347
                  ********************99873333667*************88877*********....**************************9.7******* PP

         GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                  ++e++++  gE+l+Vn++lqlh +++es    +   +vL+++ +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E+
  PCP039959.1 348 RPEDIKMYDGEVLVVNSILQLHCVVKESRGALN---SVLQMIHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQ 442
                  *************************88877777...8************************************************************* PP

         GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +++++ei+n+++ceg  r+erhe++ +Wr+r+++aGF++ +++  + +qak  l k+k  +gy++ ee+g+lvlgW+++p+v++S+W+
  PCP039959.1 443 FYFAEEIKNIISCEGPTRVERHERVDQWRRRMSRAGFQATQIK--MLAQAKQWLGKIKiCEGYTIMEEKGCLVLGWQSKPIVAASCWK 528
                  ***************************************9996..678***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    
MGPNRKFLPK EFMINNERTN KRSVLDLITH SAASAMPCYP YPYTPFLEEG ATVSILPYSD  60
ESGDHKRLKG NINISDSHNS LYSGGGSEGS CITDISLSRS SSANSLKTLP RLHFRDHIWT  120
YSQRYLAAEA VEEAATAMSN AEENGAEEDG TADGMRLVQL LIACAEAVAC RDKSHASALL  180
SELRANALVF GSSFQRVASC FVQGLANRLA LVQPLGAVGF IGSAMSTKDF ALDKKEEALR  240
LVYEICPHIQ FGHFVANSSI LEAFEGESFV HVVDLGMTLG LPHGDQWRGL IQSLATRTGQ  300
PPTRLRITGV GLCGDRLQII GGELKAYAES LGINLEFSVV ESNLENLRPE DIKMYDGEVL  360
VVNSILQLHC VVKESRGALN SVLQMIHELS PKILVLVEQD SSHNGPFFLG RFMEALHYYS  420
AIFDSLDAML PKYDTRRAKM EQFYFAEEIK NIISCEGPTR VERHERVDQW RRRMSRAGFQ  480
ATQIKMLAQA KQWLGKIKIC EGYTIMEEKG CLVLGWQSKP IVAASCWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-84GRAS family protein