PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP039565.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 470aa MW: 51386.3 Da PI: 8.8095

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP039565.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00013	61	81	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F ++ +L H++ H PCP039565.1 61 CRECGKGFQSWKSLFGHMKFH 81 *******************99 PP
2	zf-C2H2	11.4	0.001	306	328	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H PCP039565.1 306 FECTTCNKVFRSYQALGGHRASH 328 89**********99999998887 PP
3	zf-C2H2	12.1	0.00062	377	399	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H PCP039565.1 377 HSCPICYRVFSSGQALGGHKRSH 399 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MYAKEKLNTG GVKLSSSNNG GSDFEGGTHQ QPGYGLRENP KKTWRLTDSS EDTSFHPDKF 60 CRECGKGFQS WKSLFGHMKF HSEKERISIE SLEEEHEDSW TSQSENNTTA APPNRGRRSG 120 RKTRYMGATT SSSNFSIVAA AAATSSVSEI EQEQEEVAMC LMMLSRDSGH WGGLKLVARD 180 SFDGNSGFSD PPSSVGTTRV ADIKSKIATT LKLKNKLNKK VLEPRHFESL AVLEGRKSKF 240 CSSAGGFSNN DKLGSNKYNS SKRKIKETCD FELRSDQSPK NLSTSRADIL DSEVVVCKSS 300 QKRSKFECTT CNKVFRSYQA LGGHRASHKK TKGCFASKIE SGENTMETDI SPGSCCNNDN 360 PIEQEIAESG AKSTKGHSCP ICYRVFSSGQ ALGGHKRSHL IGEAKITSQT LVIQKPAAPE 420 VRNFLDLNLP APVEEESSSN HDAAAVAFKP WWVGSSSHKH EAALVGLISK

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MYAKEKLNTG GVKLSSSNNG GSDFEGGTHQ QPGYGLRENP KKTWRLTDSS EDTSFHPDKF  60
CRECGKGFQS WKSLFGHMKF HSEKERISIE SLEEEHEDSW TSQSENNTTA APPNRGRRSG  120
RKTRYMGATT SSSNFSIVAA AAATSSVSEI EQEQEEVAMC LMMLSRDSGH WGGLKLVARD  180
SFDGNSGFSD PPSSVGTTRV ADIKSKIATT LKLKNKLNKK VLEPRHFESL AVLEGRKSKF  240
CSSAGGFSNN DKLGSNKYNS SKRKIKETCD FELRSDQSPK NLSTSRADIL DSEVVVCKSS  300
QKRSKFECTT CNKVFRSYQA LGGHRASHKK TKGCFASKIE SGENTMETDI SPGSCCNNDN  360
PIEQEIAESG AKSTKGHSCP ICYRVFSSGQ ALGGHKRSHL IGEAKITSQT LVIQKPAAPE  420
VRNFLDLNLP APVEEESSSN HDAAAVAFKP WWVGSSSHKH EAALVGLISK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	1e-31	C2H2 family protein