PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP038375.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26325.6 Da PI: 9.7328 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.9 | 1.7e-20 | 30 | 78 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kr+e+k +r+vtfskR+ g++ KA ELSvL++ae a i++ss+gk++ + PCP038375.1 30 KRVEDKNKRHVTFSKRKRGLFNKAAELSVLTGAETAAIVVSSNGKVFCF 78 799******************************************9877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MAKSPDNKIT DIGTTNGKKE SKGRRRVEIK RVEDKNKRHV TFSKRKRGLF NKAAELSVLT 60 GAETAAIVVS SNGKVFCFGS PSPDTVIERY LSDNTFLLPA GQSDNHLQNN NIHHSSNKKQ 120 IEDYVEASRR LKEAKVLKGG KKNNSNNNGG DGGCSYGWWE RPIGMMTSLE ELEEYRDALY 180 KLKHNVEVRT NQMIRETSPS THFSPLLFMD DIWNSPELSH GQGFMAPEFN FFI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-23 | M-type_MADS family protein |