PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP038160.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 339aa    MW: 38116.3 Da    PI: 4.2664
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP038160.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS120.81.7e-371773382165
         GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                  +elL++ Aeav+++d  la  ++++l++        ++++ ++Rla +f ++L ++ ++  +e++++  +        ++ ++a+++++e+sP+lkf+
  PCP038160.1 177 TELLFTGAEAVEAKDRPLALYIISKLKTVvlmdtKENEDNLFNRLALFFIQGLYNKSLNVAPEISHKPVVPGP----LANIMSAFQMLQELSPYLKFA 270
                  789**********************99885544344555789*****************88888875544333....7899***************** PP

         GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerL 165
                  h++aNqaIlea+ g +++H+iD+di++G QWp+L+  La + ++++slR+T++     ++++++++ g rL
  PCP038160.1 271 HFMANQAILEAMRGVNEIHVIDLDIMEGSQWPSLMVDLAMKGGPAASLRVTAFTV---DDQQTVHQAGIRL 338
                  *****************************************************99...5677777777777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MDFELIDDPF DFKLGYIDEL NDQYQCSFGT TSATTFQTSP ETSDSFVPFA VHEDLHHLDQ  60
PLSELLQIEA KLMDVEHINQ NHIIGLESAS YVNEGTEQNA HVLTQRNQIQ VELLEESSLT  120
ELLFTGAEAV EAKDRPLTLY ISSKLKTVVL MDTKENEDNL FNRNQIQVEL LEESSLTELL  180
FTGAEAVEAK DRPLALYIIS KLKTVVLMDT KENEDNLFNR LALFFIQGLY NKSLNVAPEI  240
SHKPVVPGPL ANIMSAFQML QELSPYLKFA HFMANQAILE AMRGVNEIHV IDLDIMEGSQ  300
WPSLMVDLAM KGGPAASLRV TAFTVDDQQT VHQAGIRLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-19GRAS family protein