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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP038145.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25389.2 Da PI: 11.0135 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.9 | 5.5e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gk y ++s PCP038145.1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPSGKSYQFAS 59 79**********************************************986 PP | |||||||
2 | K-box | 65.3 | 2.2e-22 | 85 | 174 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++e++++e + L+k i +L+ +R+l Ge+L++L ++eL+qLe+qL++++++iRsk +++ e+++ l++k k+ qeen++L k+++ PCP038145.1 85 RARTMEYWRNENEELRKSIGKLEMRLRNLAGEELSTLGVQELKQLERQLKTGVERIRSKMRRIISENVSLLKRKHKASQEENTRLLKRIK 174 46679********************************************************************************99885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP SGKSYQFASH 60 DITRTISMYK REVGLPESNN SSFGRARTME YWRNENEELR KSIGKLEMRL RNLAGEELST 120 LGVQELKQLE RQLKTGVERI RSKMRRIISE NVSLLKRKHK ASQEENTRLL KRIKLHELNF 180 ADATCSTSSV GANARISAFP SRGSTESSGC LIPILPRAHL GSRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 4e-48 | MIKC_MADS family protein |