PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP036865.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 360aa    MW: 40899 Da    PI: 7.0719
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP036865.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.1e-161353343
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 i n+s r+vtf kRrng+lKKA  L +LCd++v+ i++ ++
  PCP036865.1 13 IPNESSRKVTFRKRRNGLLKKAGDLKTLCDVKVCTIVYEKK 53
                 789**********************************9754 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MGRRKSKLPL DLIPNESSRK VTFRKRRNGL LKKAGDLKTL CDVKVCTIVY EKKSKGKLST  60
AATFPKEFKD VKEIIDKYKS NSSKVKRVQS LGDFYATQTV QVKKEIGKLR GKICEEKYPA  120
WDDRFNAFSA EQMLDLLRNL ENKIVAAHDM HSTMKESKQI VVQEIIPPMA MFQSNQEYSQ  180
MLGLSDQKPS YCSMMMNDDW TQFASTSQTN SNIQYTPSAI ASNSNCKTST WEHDQIFNNN  240
YISAAYGNMD DNATFYNHTQ QQPCMYDSIF SSAASQQQQQ QAVVPSVENP NPIEALPLST  300
VLYEYDHPPL SMTMQPSYLE CPISASASAS SSGYDQQFGA SQSQNTLYDD VFYDNLWHFE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12455RKRRNGLLKKAGDLKTLCDVKVCTIVYEKKSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.17e-16M-type_MADS family protein