PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP035619.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 465aa MW: 54310.6 Da PI: 5.0212

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP035619.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.6	3.6e-22	134	217	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAk +GF +r+++s ++++++e + ++C++eg+++ ++ + ++++etrtgC a++++++ ++++w+v++++leHnH + PCP035619.1 134 NYYNYYAKALGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRKKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 217 69**************************************99888.....88999****************************77 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MNGDGSFSPI VQGLSADHDI HITIKEGSPN GEQLLEDENN DLENDCEQLF EIEGNEAESE 60 GDDTSDQFFD IESNDHENDQ GDINEQLFEI ESNNHEISRD DRTLIDDQNG GSQEKDYPPP 120 FVGLEFDSYD DAYNYYNYYA KALGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTIKEAN 180 SRKKETRTGC LAMIRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKR MDFGAKRKME 240 STPDVEVRTI KLYRTPVVDA VEKKRQEEAH NDNESRELSS MLRTRYYYEV QLSKFYTKDV 300 FRKFQDEVVM MSSCFSITQV HSNGPIVTYM IKEREGEEIL RGVRNFEVMY DKAGAEIRCM 360 CSCFNLNGYL CRHALCILNY NGVEEIPFQY ILSRWRKDFK RLYVPNLGSN NVDITNPVQW 420 FDHLYRRAMQ VVQEGMISQD HYMVSWQAFK ETLNKVRLVA DKHVQ

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MNGDGSFSPI VQGLSADHDI HITIKEGSPN GEQLLEDENN DLENDCEQLF EIEGNEAESE  60
GDDTSDQFFD IESNDHENDQ GDINEQLFEI ESNNHEISRD DRTLIDDQNG GSQEKDYPPP  120
FVGLEFDSYD DAYNYYNYYA KALGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTIKEAN  180
SRKKETRTGC LAMIRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKR MDFGAKRKME  240
STPDVEVRTI KLYRTPVVDA VEKKRQEEAH NDNESRELSS MLRTRYYYEV QLSKFYTKDV  300
FRKFQDEVVM MSSCFSITQV HSNGPIVTYM IKEREGEEIL RGVRNFEVMY DKAGAEIRCM  360
CSCFNLNGYL CRHALCILNY NGVEEIPFQY ILSRWRKDFK RLYVPNLGSN NVDITNPVQW  420
FDHLYRRAMQ VVQEGMISQD HYMVSWQAFK ETLNKVRLVA DKHVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	4e-71	FAR1 family protein