PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP035039.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 288aa    MW: 32872.3 Da    PI: 9.6362
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP035039.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.7e-141252343
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 i n+s r+  f kR++ + KKA ELS LCd++va+i++  +
  PCP035039.1 12 IPNDSARKMAFRKRKKNVYKKADELSKLCDIDVALIVYEAD 52
                 88***********************************9766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MVAPTRRSLE LIPNDSARKM AFRKRKKNVY KKADELSKLC DIDVALIVYE ADQNKDIRPI  60
QPETWPQDPV EFNRILDRYK ASRDTAAPGF SKRNFDLSDF YEAXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXPE LHKPGNKQIS EDKYPTWDPR IDQFSQDELT ILIASLEAKI  180
QASTLRIESM DRYTIYAEKQ NRNLSRPESS SSKTPHHLKP ANFDVQKPHD VHKHPSQNPI  240
NTTTTTTTST SATQSKPPAS VKCPMLPSAW ISISESQKTP LRTSSSGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12327RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-17M-type_MADS family protein