PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP034996.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 630aa    MW: 71780.5 Da    PI: 5.9296
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP034996.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.42.1e-852656282374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   + Ll++Ae v  +++e+a++lL r +  as + +p+qR+++yf+eAL++r+ + +++++yk  + s+ s    s++l++  + ++  P++ + +++a
  PCP034996.1 265 AHNLLAAAEKVGYQQFERANRLLLRCEFAASFKVNPVQRVVFYFAEALRERIEKeTGNSMYKGNEISSYSL-GLSTNLTFI-ACHQDIPFHPVLQFAA 360
                  699***************************************************77888888777777763.244444443.466778********** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   q Ile v+ e++vH iD++i  G+QW  L++ La+R+e p   l iT+vg    + k+++eetg+rLa++A++l+vpf+f++++++++ed++ + ++
  PCP034996.1 361 IQVILENVALERKVHLIDLEIRSGVQWTGLMEVLAEREECPIeLLTITAVGV---TGKQKIEETGRRLASVAKALNVPFQFKAVIVTDMEDVKNQLFD 455
                  **************************************7665499*******...68***************************************** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v+ +E+++V   l l +l  ++ +le+    +++++++lsP v+vv e ea+hns+sF++rf++al yysa+fd+lea + +++e r+ +Er  l++ 
  PCP034996.1 456 VEDDEVVVVYAPLILRTLILRPSCLEN----LMRVIRNLSPCVMVVNEVEANHNSPSFVNRFIDALFYYSAFFDCLEACM-KHEESRVLMERL-LHEG 547
                  *******************99999999....***********************************************96.555677777776.**** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i+n+va+eg+er+ r+ ++e Wr+ + ++ + ++++s+   +qa+l+ +k++s   +++ + ++l+ gWk+ p+ s+S W+
  PCP034996.1 548 IRNIVAAEGSERVTRNVKMEVWRAFFARFRMVEINFSKASLNQASLVAKKFGSPTCTLHRNGKCLIVGWKGTPIHSLSTWK 628
                  ******************************************************9*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    
MANAFFSFTP FDFGVVGGGG GLTRQLEDYE KEDQEVVVFK GKPEHLFGME ELRLGEMEEF  60
SHLSKDQPQS KTSYSMLDNF SFDTVCSEHD LQRSNNMSEK ELDHVSKDHD HRHYQQQNQR  120
CQQQSKSNYS DLDNFNFDSA FHSTQPIQDM ANQLTYSQIG GSDIAETNKQ MPHQSSLAVL  180
ELLNNYGSAF KKLKRDRFCN SCNEAGASSY SIQQKLSTEE IMRVAGARYV QFSNQGYDDF  240
FMPLHPFGYA LSGLSEEETK DVELAHNLLA AAEKVGYQQF ERANRLLLRC EFAASFKVNP  300
VQRVVFYFAE ALRERIEKET GNSMYKGNEI SSYSLGLSTN LTFIACHQDI PFHPVLQFAA  360
IQVILENVAL ERKVHLIDLE IRSGVQWTGL MEVLAEREEC PIELLTITAV GVTGKQKIEE  420
TGRRLASVAK ALNVPFQFKA VIVTDMEDVK NQLFDVEDDE VVVVYAPLIL RTLILRPSCL  480
ENLMRVIRNL SPCVMVVNEV EANHNSPSFV NRFIDALFYY SAFFDCLEAC MKHEESRVLM  540
ERLLHEGIRN IVAAEGSERV TRNVKMEVWR AFFARFRMVE INFSKASLNQ ASLVAKKFGS  600
PTCTLHRNGK CLIVGWKGTP IHSLSTWKFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-51GRAS family protein