PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP034617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 108aa MW: 12752.8 Da PI: 10.4887 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.8 | 2.5e-07 | 13 | 49 | 7 | 43 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 s r++ f kR+ +lKK EL C +++ vi +++ PCP034617.1 13 SDRTIMFRKRKRRLLKKVRELTNVCCVNAVVIFRGPH 49 679999**************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence |
MFRKKVKVAW VESDRTIMFR KRKRRLLKKV RELTNVCCVN AVVIFRGPHD NKPTMWHSGQ 60 VTEQSRKLIE HFEPDLDLPT RSFSPHEGED EEKMMSKIGG FKNDMHGI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKVAWVESDRTIMFRKRKRR |
2 | 20 | 25 | RKRKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 2e-08 | M-type_MADS family protein |