PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP034425.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

RAV

Protein Properties

Length: 345aa MW: 39505.6 Da PI: 8.8327

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP034425.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.6	2e-10	42	89	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV + +g W A+I+ + r++lg+f +++eAa a++ a+ kl+g PCP034425.1 42 RFKGVVEQP-NGHWGAQIYA------NhERVWLGTFSSENEAAMAYDSAAIKLRG 89 799997566.8****999......44***********************98 PP
2	B3	82.4	4.3e-26	169	259	1	82
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsdv+k++rlv+p + a+++ + ++ +s +l+++d rsW+++++y+k+s+++v+tkGW++Fvk ++Lk++D+++F PCP034425.1 169 FQKELTPSDVGKLNRLVIPVNNAKRCfpsmsqatsQTVESCSSQLVFYDNMMRSWTFRYCYWKSSRSFVFTKGWSRFVKTHHLKAKDILTF 259 99*************************99999988888************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MEEGMSSTVS NKGVKCKTGE VCGPSLATND SADGASRRVS KRFKGVVEQP NGHWGAQIYA 60 NHERVWLGTF SSENEAAMAY DSAAIKLRGC DCHRNFPWTK FTFEEPHFQN QYSKEAVLRM 120 IKDGSYQAQF LEYRKSRAAR ESLRSDIQFG SLARVHNNGN GKMLNRLLFQ KELTPSDVGK 180 LNRLVIPVNN AKRCFPSMSQ ATSQTVESCS SQLVFYDNMM RSWTFRYCYW KSSRSFVFTK 240 GWSRFVKTHH LKAKDILTFF QCQYKQLGDN GNKEPQTFYM VKVNWDGVES EDVSCLVEND 300 AKNYQYDNCK LEAVSQNMNE AEGILADQKK RFRLFGVEIC NEVAH

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MEEGMSSTVS NKGVKCKTGE VCGPSLATND SADGASRRVS KRFKGVVEQP NGHWGAQIYA  60
NHERVWLGTF SSENEAAMAY DSAAIKLRGC DCHRNFPWTK FTFEEPHFQN QYSKEAVLRM  120
IKDGSYQAQF LEYRKSRAAR ESLRSDIQFG SLARVHNNGN GKMLNRLLFQ KELTPSDVGK  180
LNRLVIPVNN AKRCFPSMSQ ATSQTVESCS SQLVFYDNMM RSWTFRYCYW KSSRSFVFTK  240
GWSRFVKTHH LKAKDILTFF QCQYKQLGDN GNKEPQTFYM VKVNWDGVES EDVSCLVEND  300
AKNYQYDNCK LEAVSQNMNE AEGILADQKK RFRLFGVEIC NEVAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	2e-82	RAV family protein