PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP034410.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 381aa MW: 42652.1 Da PI: 9.8527

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP034410.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	1e-05	12	34	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP034410.1 12 FVCEICNKGFQRDQNLQLHRRGH 34 89*******************88 PP
2	zf-C2H2	12.4	0.00048	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ PCP034410.1 89 WKCEKCSKKYAVQSDWKAHSKVC 111 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MSPKSLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSKTEVIR KKVYVCPEKT 60 CVHHEPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKV CGTREYRCDC 120 GTLFSRKDSF ITHRAFCDAL AAEQSARFCS ASTIHPSFMN GSFTNNTHEP QRIPNFIPMF 180 QSEFAGSDHL AANNSHLSSK AFMPEMLQTA SMDMFGSSSS SSQMQWLINK KKFVEESSFA 240 NANNLSMSSA LLLRGVLKEE EESKGSFSET ITTTTTSFYN NNINNNQNHH QQKPMSATAL 300 LQKAARTGST TSNNNPATAF NNAAFNFNDL VNFMSPSSTQ GATVGDGSLF LNNKHLMMSA 360 EAAAMTKQGQ SEQSSLTRDF L

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MSPKSLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSKTEVIR KKVYVCPEKT  60
CVHHEPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKV CGTREYRCDC  120
GTLFSRKDSF ITHRAFCDAL AAEQSARFCS ASTIHPSFMN GSFTNNTHEP QRIPNFIPMF  180
QSEFAGSDHL AANNSHLSSK AFMPEMLQTA SMDMFGSSSS SSQMQWLINK KKFVEESSFA  240
NANNLSMSSA LLLRGVLKEE EESKGSFSET ITTTTTSFYN NNINNNQNHH QQKPMSATAL  300
LQKAARTGST TSNNNPATAF NNAAFNFNDL VNFMSPSSTQ GATVGDGSLF LNNKHLMMSA  360
EAAAMTKQGQ SEQSSLTRDF L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	52	KLKQRSKTEVIRKK
2	41	54	KLKQRSKTEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	4e-87	C2H2 family protein