PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP034315.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 320aa MW: 36385.9 Da PI: 5.7632

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP034315.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	7	27	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k+Fs+ + H+r+H PCP034315.1 7 CKICNKRFSNGKAMGGHMRSH 27 *******************99 PP
2	zf-C2H2	14.2	0.00013	180	202	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H PCP034315.1 180 YKCETCDKVFRSYQALGGHRASH 202 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MEKHRICKIC NKRFSNGKAM GGHMRSHLAK LPLPPKPQSP QQQQQQHHQL SNSPESSSLP 60 FSTSNRGMHS SLDSAVVHDD SDSESHPRNP TRRRSKRRRK VLGKSSPLPF EAEQVSSVSD 120 TFSTEDVARC LIMLSMDKWK KVKVKNGVDE SVEKEEEDES DSGGRSDFRI KDRVRSRGKY 180 KCETCDKVFR SYQALGGHRA SHKKTIKTQV FDDYEEDEDE DFEEDDGQDG NQDVVENHRT 240 FECCVCFRQF DSGQALGGHK KVHYYNNLTN NAPARNVNLS SSSTNFVDNL VIDLNLPAPE 300 EEEEEEDEEV SQVEFSTVSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-32	C2H2 family protein