PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP033723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 108aa MW: 12505.4 Da PI: 10.0254 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.7 | 1.5e-08 | 13 | 50 | 7 | 44 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 s r++ f kR+ il K EL + C++++ vi +++g PCP033723.1 13 SDRTIMFQKRKRRILNKVRELTTVCGVNAVVIFRGPHG 50 67999****************************99998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence |
MFRKKVKVAW VESDRTIMFQ KRKRRILNKV RELTTVCGVN AVVIFRGPHG NKPTVWHSGQ 60 VTEESRKLIE HFEPDLDLPS SSFSPYEGED EEKMMSKIGG FKNDMHGI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKVAWVESDRTIMFQKRKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 3e-12 | M-type_MADS family protein |