PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP033235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 139aa MW: 16077.9 Da PI: 10.3906 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.1 | 3e-15 | 13 | 50 | 5 | 42 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ++ r+ tf kR+ng++KK +ELS+LC+++ + i++s+ PCP033235.1 13 DDASRKATFKKRKNGLMKKVKELSILCGIDSSAIVYSQ 50 567899******************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 139 aa Download sequence |
MARKKIKLAY LRDDASRKAT FKKRKNGLMK KVKELSILCG IDSSAIVYSQ YDIKPEVGPN 60 PDVTRRIIAR FKQMQEMDKR KNMMNQESIL RQQIVKVEEQ LKKLNKENQE KEIMIQSMYG 120 SLPADCLQNL SGTDLNGLL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 25 | RKKIKLAYLRDDASRKATFKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 5e-28 | M-type_MADS family protein |