PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP033157.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 443aa    MW: 48959.8 Da    PI: 5.2746
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP033157.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.21e-91474322373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlt 97 
                  ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r ++  ++ ++    s+++++  s+ +++++l  ++++ P+++f++ +
  PCP033157.1  47 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRASKVFPTPMNFN-GSSSTSTIPSRLMSVTELagYVDLIPWHRFGYCA 143
                  689***************************************************777777654.44444445666666666689************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvak.rledl.. 189
                   N+aI +a+eg+ +vHi+Df+i++++QWp+L++aL +Rpegpp lRiT+ +   ++    + + ee+g rL +f +  +vpfefnv+  + +le l  
  PCP033157.1 144 SNSAICKAIEGCPKVHILDFSITHCMQWPTLIDALEKRPEGPPLLRITVPHWGPQVpplLNVSSEEVGLRLGNFSRFRNVPFEFNVIENSsSLELLlg 241
                  ************************************************998855557889999***********************944436665566 PP

         GRAS 190 ...eleeLrvkpgEalaVnlvlqlhrll.........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                     ++++L ++++E+l+Vn++  lh+l          ++++s    r+++L++++sl+P+++vvv++++d++++s+  r++ +++y +  fdsle+ l
  PCP033157.1 242 tqlNPSSLGLREDEVLVVNCQNWLHYLSdeplggipgHQDGS---MRNTFLNTIRSLNPRIIVVVDEDSDLTAPSLSSRITTCFNYLWIPFDSLETFL 336
                  6669************************44444433333333...666************************************************** PP

         GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  p++s +r+++E   +g +i+n++  eg++r+er e+  + ++rl++ GF+++p+ e++ak++k+ll +++  g+ ++ e++ lvl+Wk+++ v+++aW
  PCP033157.1 337 PKDSTQRMNYESD-VGHKIENIIGFEGQQRIERLESGVTMSQRLRNIGFSSAPFCEETAKEVKALLDEHA-SGWGMKREEDMLVLTWKGHNSVFATAW 432
                  *************.********************************************************.889999999****************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    
MKTEVRGSIT SVSLQNPSTA LFTTSQGKSL TGALTGCLGS LDGACIEKLL LHCASALESN  60
DVTLAQQVMW VLNNVASSVG DPNQRLTSWI LRALISRASK VFPTPMNFNG SSSTSTIPSR  120
LMSVTELAGY VDLIPWHRFG YCASNSAICK AIEGCPKVHI LDFSITHCMQ WPTLIDALEK  180
RPEGPPLLRI TVPHWGPQVP PLLNVSSEEV GLRLGNFSRF RNVPFEFNVI ENSSSLELLL  240
GTQLNPSSLG LREDEVLVVN CQNWLHYLSD EPLGGIPGHQ DGSMRNTFLN TIRSLNPRII  300
VVVDEDSDLT APSLSSRITT CFNYLWIPFD SLETFLPKDS TQRMNYESDV GHKIENIIGF  360
EGQQRIERLE SGVTMSQRLR NIGFSSAPFC EETAKEVKAL LDEHASGWGM KREEDMLVLT  420
WKGHNSVFAT AWVPNPNALL IED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-123GRAS family protein