PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP033112.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 490aa MW: 53602 Da PI: 7.3916

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP033112.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+sF++ ++ +H ++ PCP033112.1 133 FECPICGQSFRSEDEVSVHVESC 155 89*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MGDMKDKFKG FMKNTFSSSS SGKFKGQGRV LGSSSSSGPA DSVLTRPKQA PQSHPKPVSN 60 SNPNSSVAFP NPKPSPQKTQ IIDQEKTQIP DQSKAEPSID SKPDRKTETG FDPFDALTTP 120 GKRSQNGFTL NVFECPICGQ SFRSEDEVSV HVESCVNNLV ETKSVEGVGV SGSPDNGSES 180 SRSELEARIG TFASGNPAAG SVEVVLRLLR NIVKEPENVK FRRIRMSNPK IREAIGEVVG 240 GIELLEFVGF ELKEEDGEMW AVMEVPKEEQ INLMKRGIAL LEPPKVQEVD ISASIASLKV 300 DEPVEPKKVD RQTRVFFSVS ESVAARIEVP ASFYNLSATE LKREAEMRKK KIEDSQMLIP 360 KSFKEKQAKA AKRRYRKTVI RIQFPDGVVL QGVFSPLEPT SSLYEYVSSA LKEPSLEFEL 420 LNPVALKRRV IPHFPAAGKK AATLADEDLM PSALVKFKPI ETDSVVFTGL CNELLEVSEP 480 LTSGSAAAPV

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MGDMKDKFKG FMKNTFSSSS SGKFKGQGRV LGSSSSSGPA DSVLTRPKQA PQSHPKPVSN  60
SNPNSSVAFP NPKPSPQKTQ IIDQEKTQIP DQSKAEPSID SKPDRKTETG FDPFDALTTP  120
GKRSQNGFTL NVFECPICGQ SFRSEDEVSV HVESCVNNLV ETKSVEGVGV SGSPDNGSES  180
SRSELEARIG TFASGNPAAG SVEVVLRLLR NIVKEPENVK FRRIRMSNPK IREAIGEVVG  240
GIELLEFVGF ELKEEDGEMW AVMEVPKEEQ INLMKRGIAL LEPPKVQEVD ISASIASLKV  300
DEPVEPKKVD RQTRVFFSVS ESVAARIEVP ASFYNLSATE LKREAEMRKK KIEDSQMLIP  360
KSFKEKQAKA AKRRYRKTVI RIQFPDGVVL QGVFSPLEPT SSLYEYVSSA LKEPSLEFEL  420
LNPVALKRRV IPHFPAAGKK AATLADEDLM PSALVKFKPI ETDSVVFTGL CNELLEVSEP  480
LTSGSAAAPV