PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP032282.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 416aa MW: 47161.3 Da PI: 8.2164

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP032282.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	158	181	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H PCP032282.1 158 YVCGVCGRKCKTNLDLKKHFKQlH 181 9******************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MKLLCNPIHT FPYKPFLPIS LHSSRSPFFH SKRALLSQPI ITTAATSTTR NCRRVVIKSS 60 ASSEIDMVQN KQGIYTPKQK KVVILWDLDN KPPRGPPYQA AMALKQLAQR FGEVVDASAY 120 ANRHAFVHLP QWVIEERRDR KQLDILERKG VVSPPDPYVC GVCGRKCKTN LDLKKHFKQL 180 HERERQKKLN RMGSLKGKKR QRFKERFVSG NHKYNEAARS LIKPKVGYGL ASELRRAGVF 240 VKTVEDKPQA ADWALKRQMQ HSMSRGIDWL FLVSDDSDFS NMLRKAREAK LGTVVVGDLD 300 RALGRHADVW VPWVGVENGE VSEKDLVPRR RISEFFDGDE EENSDGLFSD FGFDGGSGLD 360 NAVDELVRSS QSGGLRISAF SEGELEGGDW VEDDSDSEEY LLDSENEDSD EEDGFF

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MKLLCNPIHT FPYKPFLPIS LHSSRSPFFH SKRALLSQPI ITTAATSTTR NCRRVVIKSS  60
ASSEIDMVQN KQGIYTPKQK KVVILWDLDN KPPRGPPYQA AMALKQLAQR FGEVVDASAY  120
ANRHAFVHLP QWVIEERRDR KQLDILERKG VVSPPDPYVC GVCGRKCKTN LDLKKHFKQL  180
HERERQKKLN RMGSLKGKKR QRFKERFVSG NHKYNEAARS LIKPKVGYGL ASELRRAGVF  240
VKTVEDKPQA ADWALKRQMQ HSMSRGIDWL FLVSDDSDFS NMLRKAREAK LGTVVVGDLD  300
RALGRHADVW VPWVGVENGE VSEKDLVPRR RISEFFDGDE EENSDGLFSD FGFDGGSGLD  360
NAVDELVRSS QSGGLRISAF SEGELEGGDW VEDDSDSEEY LLDSENEDSD EEDGFF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	178	RRDRKQLDILERKGVVSPPDPYVCGVCGRKCKTNLDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-175	C2H2 family protein