PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP032202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 18149.1 Da PI: 10.1448 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.3 | 2e-18 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i ++ r+vtf kR+ng++KK +ELS+LC+++v+ i++s+ PCP032202.1 11 IRDDVSRKVTFKKRKNGLMKKVKELSILCGIDVSAIVYSQ 50 88999*********************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence |
MTRKKIKLAY IRDDVSRKVT FKKRKNGLMK KVKELSILCG IDVSAIVYSQ YDTKPDVGSC 60 RDVARRIVTR FKQMPERDKS RNMLNQESFL RQQILKAEEQ LKKQIKENQE KEIMVQSMRG 120 SLPGDWLQNL SGTDLNGLLL SIEKNIEAIE EEMQEA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKIKLAYIRDDVSRKVTFKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-29 | M-type_MADS family protein |