PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP032031.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 513aa    MW: 56470.6 Da    PI: 5.6075
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP032031.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.53e-1041255041374
         GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPil 91 
                  lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l + +    k l    +++++    +++++aa++l++++sP++
  PCP032031.1 125 LVHLLMAAAEALTGANKSrdLARVILFRLKELVSPTDgSNMERLAAYFTEALQGLLEGAGGLHGKHLIGIGAHHYHghhpTDDVIAAFQLLQDMSPYV 222
                  68**********997776669***********9987769******************965544454433333334345569***************** PP

         GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                  kf+h+taNqaIleav++++rvH++D+di++G+QW++L+qaL sR+egpp  +lRiT++++  sg  s  +++etg+rL+ fA+++g pf+f+    ++
  PCP032031.1 223 KFGHFTANQAILEAVAHDRRVHVVDYDIMEGIQWASLMQALVSRKEGPPtpHLRITALSRGGSGrrSIGTVQETGRRLTAFAASIGQPFSFHQCRLDS 320
                  *********************************************887666*********888898999************************9999* PP

         GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseer 282
                   e++++++L++ +gEal++n++l+l ++  +s+++     ++L+  k+l+P++v++ve+e+   +++ F++rf+++l++ysa++dslea++p ++++r
  PCP032031.1 321 DETFRPSALKLVKGEALVINCMLNLPHFNYRSQDSIA---SFLSGSKTLNPRLVTLVEEEVRPaGDGGFVARFMDSLYHYSAVYDSLEAGFPMQNRAR 415
                  ****************************966665555...9********************999********************************** PP

         GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                  + vEr++lg++i   +a   ++    +e  ++W e+l+++GFkp+p+s  + +qaklll  ++ dgyr ee  ++ lvlgWk+r L+s+S W+
  PCP032031.1 416 ALVERVFLGPRIAGSLARIYRA---HEEVRSSWWEWLGAVGFKPMPISFANHCQAKLLLGLFN-DGYRAEEVaNHRLVLGWKSRCLLSASIWT 504
                  ********************99...5566689*******************************.******76488899**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    
MTQLLLSSAM AIAIDGHDLD LDLSGCTTTT TSTNTVSTDH WYDWSPVVDW DALEPTDHLA  60
GEDFHGLIES MMEDQDGSTE LNLSSAQNEH LELEASNDTT SSAEMMRLTD EDGSANGEDS  120
KGLRLVHLLM AAAEALTGAN KSRDLARVIL FRLKELVSPT DGSNMERLAA YFTEALQGLL  180
EGAGGLHGKH LIGIGAHHYH GHHPTDDVIA AFQLLQDMSP YVKFGHFTAN QAILEAVAHD  240
RRVHVVDYDI MEGIQWASLM QALVSRKEGP PTPHLRITAL SRGGSGRRSI GTVQETGRRL  300
TAFAASIGQP FSFHQCRLDS DETFRPSALK LVKGEALVIN CMLNLPHFNY RSQDSIASFL  360
SGSKTLNPRL VTLVEEEVRP AGDGGFVARF MDSLYHYSAV YDSLEAGFPM QNRARALVER  420
VFLGPRIAGS LARIYRAHEE VRSSWWEWLG AVGFKPMPIS FANHCQAKLL LGLFNDGYRA  480
EEVANHRLVL GWKSRCLLSA SIWTSPSESD VIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-158GRAS family protein