PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP031779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 21355.3 Da PI: 6.9657 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27 | 5.9e-09 | 11 | 60 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE.EEEEE-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaev.aviifsstgklyeyss 51 i+ + r t+ kR++ + K +E+ +LC++ + avi+ s+ k+ ++s PCP031779.1 11 ISHEPSRRATLKKRKASFFRKLNEITTLCGVIAsAVIYNTSDTKVDVWPS 60 677778999*********************87626888888899988875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MAKNRSKHEL ISHEPSRRAT LKKRKASFFR KLNEITTLCG VIASAVIYNT SDTKVDVWPS 60 PQEAFYVLEK FKNLPEERQV KFMVDQESFL KNNISKLNRQ LERARFKNHE LDEKLLLIEY 120 LELEGKNFLD PGRLESLIGL DHQLDKRIDF ITKRIEFFEG VGRNQVDAGV DSDEMVGVVD 180 DNQG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 1e-21 | M-type_MADS family protein |