PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP031618.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 343aa MW: 36014.2 Da PI: 4.488

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP031618.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.6	5.5e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r PCP031618.1 1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNAVHLKHCVQSYNVFDFLRDIVSR 69 899***************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNAVHL KHCVQSYNVF 60 DFLRDIVSRV PDYTHGHSDA AADDRTLSKR RKPPGDEGID SDEELKRSKM LEIKNSSSSG 120 RGRGRGRGRG RGRGRTTERD TSHHETESDP CTSLRQITEP NPNPGMVVDD VSESKDILKE 180 NVIAPDESDP AVRNFDLNAD VNDTDDTKAA ATAAQASATA VQASATAAQA SATAAQASAT 240 AAQASATAAQ ASATAAQASA TAVQASSTAA QAAPTAAPAA PTASQAAPTA AQASSAGPIS 300 EPKHEEYPGW SLSDVDGMAI DPIQLANLSR RLDEDEEDYD EEG

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNAVHL KHCVQSYNVF  60
DFLRDIVSRV PDYTHGHSDA AADDRTLSKR RKPPGDEGID SDEELKRSKM LEIKNSSSSG  120
RGRGRGRGRG RGRGRTTERD TSHHETESDP CTSLRQITEP NPNPGMVVDD VSESKDILKE  180
NVIAPDESDP AVRNFDLNAD VNDTDDTKAA ATAAQASATA VQASATAAQA SATAAQASAT  240
AAQASATAAQ ASATAAQASA TAVQASSTAA QAAPTAAPAA PTASQAAPTA AQASSAGPIS  300
EPKHEEYPGW SLSDVDGMAI DPIQLANLSR RLDEDEEDYD EEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	130	RGRGRGRGRG
2	121	131	RGRGRGRGRGR
3	123	132	RGRGRGRGRG
4	123	133	RGRGRGRGRGR
5	125	134	RGRGRGRGRG
6	125	135	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-57	NF-YC family protein