PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP031404.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 305aa    MW: 33016.4 Da    PI: 8.8152
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP031404.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025117139123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  PCP031404.1 117 FSCNYCQRKFYSSQALGGHQNAH 139
                  89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MKPHASDPSL SENSSIFPPS EAPLPPNLLK GSNMETPSAE KQPSVQDHHQ GHPQDQIRNL  60
ALDLSLSNKE SDNGSKPELN LINCFDSNNT SGNSSSETSN PIGATTTATT DFEPRVFSCN  120
YCQRKFYSSQ ALGGHQNAHK RERTLAKKGN KSNCTAAAED ALMRLPSLLS SHRFSSMASL  180
PLHGSFNNRS LGIQVHSTIH KPCYQSNTFG GNNNGNYGWF RRPIDHQHVI GRLVPPNNVF  240
HVQGGVSSSS SPSSGGVGRF SYSTNGRKFC PAAEGTGGLW WSNSAAGHFN AKQDELQKLD  300
LSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.15e-40C2H2 family protein