PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP031179.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 355aa MW: 39430.6 Da PI: 6.5083

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP031179.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.8	8.8e-12	19	62	5	48
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T+eE +++ v ++G+ +W++++++ g +R++k+ck+rw ++l PCP031179.1 19 TAEEGAKILAHVSKHGPSNWTSVPKKTGVTRCGKSCKLRWTNHL 62 89***************************************996 PP
2	Myb_DNA-binding	48.5	2e-15	70	111	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ E+el+v++++ G++ W tIa++++ gRt++++k++w++ PCP031179.1 70 SFTPHEEELIVRLHATIGSR-WPTIAQHLP-GRTDNDVKNYWNT 111 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MVRPACCDKL HVKRGTLCTA EEGAKILAHV SKHGPSNWTS VPKKTGVTRC GKSCKLRWTN 60 HLKSNLKHES FTPHEEELIV RLHATIGSRW PTIAQHLPGR TDNDVKNYWN TKLKKKLSEM 120 GIDHVTHKPF SQILADYGNI GGLPKVGMRI GIGSLNKDLR NLMLMKPAEP YSFPAQGFSN 180 INSHLMPITM IPTKAEPILD SFLGHTQPGS QPPDLLTQLQ AIKLVTEAFK STESQSSAPN 240 FYSHEGTLSS SSSTSSATQE QATLQAFSWS DFLLEDAFMP IGDAQEHENK AEYSSKDQAQ 300 VAIQQSQIDV DYAISTNEVE ATSAACDSSF VEAMVARENE MFLEFPELME EPFYY

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MVRPACCDKL HVKRGTLCTA EEGAKILAHV SKHGPSNWTS VPKKTGVTRC GKSCKLRWTN  60
HLKSNLKHES FTPHEEELIV RLHATIGSRW PTIAQHLPGR TDNDVKNYWN TKLKKKLSEM  120
GIDHVTHKPF SQILADYGNI GGLPKVGMRI GIGSLNKDLR NLMLMKPAEP YSFPAQGFSN  180
INSHLMPITM IPTKAEPILD SFLGHTQPGS QPPDLLTQLQ AIKLVTEAFK STESQSSAPN  240
FYSHEGTLSS SSSTSSATQE QATLQAFSWS DFLLEDAFMP IGDAQEHENK AEYSSKDQAQ  300
VAIQQSQIDV DYAISTNEVE ATSAACDSSF VEAMVARENE MFLEFPELME EPFYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	7e-59	MYB family protein