PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP031080.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 540aa MW: 60495.9 Da PI: 6.6222

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP031080.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	123	144	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k F++ +L+ H+r+H PCP031080.1 123 SCYVCKKDFPSIKSLHGHMRLH 144 69******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MKDFQEKNKH LKEDHEEEEE EENQEIVDHD DVHSQEIEEQ VPASDDVDHK GKQVVLDSDV 60 VHHRSGDRVC EQCGKIFQNG KALGGHRKVH FNQSLLPKKN KALFKPKKKH VASNEGGSSS 120 EVSCYVCKKD FPSIKSLHGH MRLHRERDWK GVRPPGAVPP PSEESKSSSY ENDSSDDDGD 180 GDSSFSDHTI ETDNDAAKFL VNWKKIEQRR RIANQRDPNC EDKVGEFGGK KLIEESTVGY 240 KGNPSSKNIK FDGRSSKKIT MERSKSFGGT KPKKYIGLLD QTLNQISSKP QEFRFRRSDA 300 AMSDVNETGF SSKYAADQVS ESASEKAIEE SPRGYKGNTP LKIKLKLDGR SNKTLEKSRN 360 SGSVSFVSNK LRVGGKEKVS VEEDDDDENA DEISWRVKSK KVMMKAVSKT GKKPIKDTAL 420 LDQARYQIPR RTQEFGATYA ERGNYNGSSA TSNQVLERAE EAEAVEQETK QFVCNICPCK 480 FSTGQALGGH KRGHNYRMPV ENAPGTAEIA PVDEKDGEIN IVPEKLDLDL NQLPYESNDE

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MKDFQEKNKH LKEDHEEEEE EENQEIVDHD DVHSQEIEEQ VPASDDVDHK GKQVVLDSDV  60
VHHRSGDRVC EQCGKIFQNG KALGGHRKVH FNQSLLPKKN KALFKPKKKH VASNEGGSSS  120
EVSCYVCKKD FPSIKSLHGH MRLHRERDWK GVRPPGAVPP PSEESKSSSY ENDSSDDDGD  180
GDSSFSDHTI ETDNDAAKFL VNWKKIEQRR RIANQRDPNC EDKVGEFGGK KLIEESTVGY  240
KGNPSSKNIK FDGRSSKKIT MERSKSFGGT KPKKYIGLLD QTLNQISSKP QEFRFRRSDA  300
AMSDVNETGF SSKYAADQVS ESASEKAIEE SPRGYKGNTP LKIKLKLDGR SNKTLEKSRN  360
SGSVSFVSNK LRVGGKEKVS VEEDDDDENA DEISWRVKSK KVMMKAVSKT GKKPIKDTAL  420
LDQARYQIPR RTQEFGATYA ERGNYNGSSA TSNQVLERAE EAEAVEQETK QFVCNICPCK  480
FSTGQALGGH KRGHNYRMPV ENAPGTAEIA PVDEKDGEIN IVPEKLDLDL NQLPYESNDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	2e-14	C2H2 family protein